BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0637400 Os12g0637400|AK072546
         (135 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16430.2  | chr2:7120502-7122772 REVERSE LENGTH=469             86   6e-18
AT5G34850.1  | chr5:13108475-13111217 REVERSE LENGTH=476           80   2e-16
AT2G27190.1  | chr2:11621400-11623438 REVERSE LENGTH=470           73   5e-14
AT2G18130.1  | chr2:7879308-7883935 REVERSE LENGTH=442             57   2e-09
AT1G56360.1  | chr1:21098603-21100842 REVERSE LENGTH=467           57   3e-09
AT4G36350.1  | chr4:17173737-17175857 REVERSE LENGTH=467           55   8e-09
AT1G52940.1  | chr1:19716402-19723716 FORWARD LENGTH=397           53   6e-08
AT3G46120.1  | chr3:16935921-16939766 REVERSE LENGTH=389           52   1e-07

>AT2G16430.2 | chr2:7120502-7122772 REVERSE LENGTH=469
          Length = 468

 Score = 85.9 bits (211), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/98 (46%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 32  GTTSVYRRPKKKAADMVDMPLDADVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVTMEEA 91
           G TS Y R   K    VDMPLD+DVF  P G NAPQQVHIT GD  G A+ VSWVT E  
Sbjct: 28  GITSRYVR---KLEATVDMPLDSDVFRVPCGYNAPQQVHITQGDVEGKAVIVSWVTQEAK 84

Query: 92  GNSTVLYGXXXXXXXXXXXXXXXXXXXXXXXSGFIHHC 129
           G++ V+Y                        SGFIHHC
Sbjct: 85  GSNKVIYWKENSTKKHKAHGKTNTYKFYNYTSGFIHHC 122



>AT5G34850.1 | chr5:13108475-13111217 REVERSE LENGTH=476
          Length = 475

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/98 (44%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 32  GTTSVYRRPKKKAADMVDMPLDADVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVTMEEA 91
           G TS + R +  A   VD+PLD  VF  P G NAPQQVHIT GD  G A+ +SWVT +E 
Sbjct: 23  GITSSFIRSEWPA---VDIPLDHHVFKVPKGYNAPQQVHITQGDYDGKAVIISWVTPDEP 79

Query: 92  GNSTVLYGXXXXXXXXXXXXXXXXXXXXXXXSGFIHHC 129
           G+S V YG                       SGFIHHC
Sbjct: 80  GSSQVHYGAVQGKYEFVAQGTYHNYTFYKYKSGFIHHC 117



>AT2G27190.1 | chr2:11621400-11623438 REVERSE LENGTH=470
          Length = 469

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 50/99 (50%), Gaps = 5/99 (5%)

Query: 32  GTTSVYRRPKKKAADMVD-MPLDADVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVTMEE 90
           G TS Y R     +D+ D MPLD+DVF  P G N+PQQVH+T G+  G  + +SWVT  +
Sbjct: 29  GFTSEYVR----GSDLPDDMPLDSDVFEVPPGPNSPQQVHVTQGNHEGNGVIISWVTPVK 84

Query: 91  AGNSTVLYGXXXXXXXXXXXXXXXXXXXXXXXSGFIHHC 129
            G+ TV Y                        SG+IHHC
Sbjct: 85  PGSKTVQYWCENEKSRKQAEATVNTYRFFNYTSGYIHHC 123



>AT2G18130.1 | chr2:7879308-7883935 REVERSE LENGTH=442
          Length = 441

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 32  GTTSVYRRPKKKAADMVDMPLDADVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVT-MEE 90
           G TS + R  + + +M       + F  PAG NAP+QVHIT GD  G AM +SWV  + E
Sbjct: 25  GITSTHARVSEPSEEM-----SLETFPPPAGYNAPEQVHITQGDNAGRAMIISWVMPLNE 79

Query: 91  AGNSTVLY--GXXXXXXXXXXXXXXXXXXXXXXXSGFIHHCT 130
            G++ V Y                          SG++HH T
Sbjct: 80  DGSNVVTYWIASSDGSDNKNAIATTSSYRYFNYTSGYLHHAT 121



>AT1G56360.1 | chr1:21098603-21100842 REVERSE LENGTH=467
          Length = 466

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 32  GTTSVYRRPKKKAADMVDMPLDADVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVT-MEE 90
           G TS + R   +A   ++M LD   F  P G N P+QVH+T GD  G  M VSWVT +  
Sbjct: 21  GITSKFVR---QALPSIEMSLDT--FPSPGGYNTPEQVHLTQGDHDGRGMIVSWVTPLNL 75

Query: 91  AGNSTVLY-----GXXXXXXXXXXXXXXXXXXXXXXXSGFIHHCT 130
           AG++ V Y     G                       SGF+HH T
Sbjct: 76  AGSNVVTYWIATNGSDVKPAKKRAHASTKSYRFYDYSSGFLHHAT 120



>AT4G36350.1 | chr4:17173737-17175857 REVERSE LENGTH=467
          Length = 466

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 10/104 (9%)

Query: 32  GTTSVYRRPKKKAADMVDMPLDADVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVT-MEE 90
           GTTS + R  + + +M       + F  PAG NAP+QVHI  GD  G  + +SWVT +  
Sbjct: 22  GTTSNFVRTAQPSTEM-----SLETFPSPAGHNAPEQVHIVQGDYNGRGIIISWVTPLNL 76

Query: 91  AGNSTVLYGXXXXXXXXXXXXXXXXXXXXXX----XSGFIHHCT 130
           AG++ V Y                            SGF+HH T
Sbjct: 77  AGSNVVTYWKAVDGDVKPKKKRGHASTSSYRFYDYTSGFLHHAT 120



>AT1G52940.1 | chr1:19716402-19723716 FORWARD LENGTH=397
          Length = 396

 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 55 DVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVT-MEEAGNSTVLY 98
          + F  PAG NAP+QVHIT GD  G  M +SWVT + E G++ V Y
Sbjct: 4  ETFPPPAGYNAPEQVHITQGDHNGRGMIISWVTSLNEDGSNVVTY 48



>AT3G46120.1 | chr3:16935921-16939766 REVERSE LENGTH=389
          Length = 388

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 32 GTTSVYRRPKKKAADMVDMPLDADVFAEPAGRNAPQQVHITLGDQTGTAMTVSWVT-MEE 90
          G TS + R  + + +M   PL+   F  PA  NAP+QVHIT GD  G  M +SWVT + E
Sbjct: 25 GVTSTHVRVSEPSEEM---PLE--TFPPPACYNAPEQVHITQGDHAGRGMIISWVTPLNE 79

Query: 91 AGNSTVLY 98
           G++ V Y
Sbjct: 80 DGSNVVTY 87



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.130    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,950,145
Number of extensions: 56762
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 8
Length of query: 135
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 47
Effective length of database: 8,693,961
Effective search space: 408616167
Effective search space used: 408616167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)