BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0635700 Os12g0635700|AK108161
(294 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36830.1 | chr4:17349511-17350380 FORWARD LENGTH=290 183 8e-47
AT1G75000.1 | chr1:28163650-28164586 FORWARD LENGTH=282 167 5e-42
>AT4G36830.1 | chr4:17349511-17350380 FORWARD LENGTH=290
Length = 289
Score = 183 bits (465), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 137/264 (51%), Gaps = 3/264 (1%)
Query: 10 YWLAEHPAIVSFRWSPTGLWFSTWAFLLGFLASYVXXXXXXXXXXXXXXXXXXXXXXXXX 69
Y+L+EHP IV FRWS + W STW+FL ++ Y+
Sbjct: 11 YFLSEHPYIVGFRWSNSQSWGSTWSFLFTSISLYIAVSSSLHILLSAVRRSNRSVPLGHI 70
Query: 70 XXXXXXXXXXXXXXIFAGTLLSALAEIXXXXXXXXXXXXXXPFRWLLCFPPGTRSSGRVF 129
IFAG LLSA AEI P +WLLCFP GTR SGRVF
Sbjct: 71 PEIHSLLMSILSATIFAGILLSAAAEIRDTRWLWRRSKTATPLQWLLCFPLGTRPSGRVF 130
Query: 130 FWSYAYYLSRYLHAARGLFAVLQXXXXXXXXXXXXXXXXXXXFLWLEFSQSFQVLAILAS 189
FWSY +YL+R+LH R +FAVL+ FLWLEFSQS+Q+LAIL++
Sbjct: 131 FWSYVFYLTRFLHMFRTIFAVLRSRRLAVSQLFCNSVMAFTSFLWLEFSQSYQILAILST 190
Query: 190 TLAHAVAFGFRFWVGAGLPAARGAPVALACQCALLGCNLLCHVGVVWMHFXXXXXXXXXX 249
TL ++V +G+RFW G GLP + + CQ L+GCNL+ H GV+ MH
Sbjct: 191 TLVYSVVYGYRFWTGFGLPGSAFPSFVVNCQLVLVGCNLVSHAGVLTMHL---FKGGCNG 247
Query: 250 XXAWVFNTLLNAALLWVFLHCYGK 273
AW N++LN A+L +FL+ Y +
Sbjct: 248 IGAWGLNSVLNGAILLLFLNFYVR 271
>AT1G75000.1 | chr1:28163650-28164586 FORWARD LENGTH=282
Length = 281
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 138/269 (51%), Gaps = 11/269 (4%)
Query: 10 YWLAEHPAIVSFRWSPTGLWFSTWAFLLGFLASYVXXXXXXXXXXXXXXXXXXXXXXXX- 68
Y+LAEHP IV+FRWSPT + STW+FL ++SY+
Sbjct: 6 YYLAEHPTIVNFRWSPTQSYASTWSFLFTAVSSYIIAAVTLHLLLLITLSLSNRRRGFSL 65
Query: 69 --XXXXXXXXXXXXXXXIFAGTLLSALAEIXXXXXXXXXXXXXXPFRWLLCFPPGTRSSG 126
IF G LLSA AEI +W LCFP GTR+SG
Sbjct: 66 GPIPALHSLTISIISAVIFVGILLSAAAEIRDTRWLWRRTRTT-ALQWFLCFPVGTRASG 124
Query: 127 RVFFWSYAYYLSRYLHAARGLFAVLQXXXXXXXXXXXXXXXXXXXFLWLEFSQSFQVLAI 186
RVFFWSYA+YLSR+LH R F+V++ FLWLE+SQSFQV+AI
Sbjct: 125 RVFFWSYAFYLSRFLHLFRTFFSVIRRRKLSFFQLINQSSLLCISFLWLEYSQSFQVVAI 184
Query: 187 LASTLAHAVAFGFRFWVGAGLPAARGA--PVALACQCALLGCNLLCHVGVVWMHFXXXXX 244
L +T+++AV +G+RFW GL RGA P CQ LLGC +CHVGV+ +H
Sbjct: 185 LLTTVSYAVVYGYRFWTEIGL---RGACFPFVGNCQAILLGCMTVCHVGVLCIHL--VKR 239
Query: 245 XXXXXXXAWVFNTLLNAALLWVFLHCYGK 273
AW+FN++LNA + ++L Y K
Sbjct: 240 GGCNGIGAWLFNSVLNAVITLLYLKFYCK 268
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.332 0.142 0.509
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,470,096
Number of extensions: 124842
Number of successful extensions: 414
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 4
Length of query: 294
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 196
Effective length of database: 8,419,801
Effective search space: 1650280996
Effective search space used: 1650280996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 111 (47.4 bits)