BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0622900 Os12g0622900|AK106674
         (499 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56280.1  | chr5:22783617-22785530 REVERSE LENGTH=318          171   1e-42
AT4G26430.1  | chr4:13355229-13357326 FORWARD LENGTH=318          164   8e-41
AT5G27120.1  | chr5:9541287-9543684 FORWARD LENGTH=534             62   9e-10
AT3G05060.1  | chr3:1413174-1415564 REVERSE LENGTH=534             59   9e-09

>AT5G56280.1 | chr5:22783617-22785530 REVERSE LENGTH=318
          Length = 317

 Score =  171 bits (432), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 123/201 (61%), Gaps = 27/201 (13%)

Query: 16  LTFRLHPLAVLKLS-HRIREFVHLH---------------DDQYQQ-ARMSGCVIGVRRG 58
           LTF+LHPL ++ +S H  R    L+               +  +QQ  R+ GCVIGV+RG
Sbjct: 9   LTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYGCVIGVQRG 68

Query: 59  GTVDISDTFDILHDPDPGTFDRALLEKDQEIYKKAFPDLSVLGWYSIGTNVHATDTGIHH 118
            TV+I ++F++L+DP   T DR+ LEK QE+YKK FPD  +LGWYS G++          
Sbjct: 69  RTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSD---------- 118

Query: 119 GDYTDMQIHQTLMDANGTAFYLLLNPAINFSHKDIPVTIYERVLCNSDGSPPVSFVQGNY 178
            + +DM IH+ LMD N +  Y+LLNPAIN + KD+PVTIYE  L   DG P + F   +Y
Sbjct: 119 AEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSY 178

Query: 179 TVEIVGAERISLDHADFLYPS 199
           T+E V AERIS+DH   L PS
Sbjct: 179 TIETVEAERISVDHVAHLKPS 199



>AT4G26430.1 | chr4:13355229-13357326 FORWARD LENGTH=318
          Length = 317

 Score =  164 bits (416), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 120/201 (59%), Gaps = 27/201 (13%)

Query: 16  LTFRLHPLAVLKLS-HRIREFVHLHDDQ----------------YQQARMSGCVIGVRRG 58
           LTF+LHPL +L +S H  R    L+                    Q  R+ GCVIG++RG
Sbjct: 9   LTFKLHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYGCVIGLQRG 68

Query: 59  GTVDISDTFDILHDPDPGTFDRALLEKDQEIYKKAFPDLSVLGWYSIGTNVHATDTGIHH 118
            TV+I ++F+++ DP   T DR+ LEK QE+YKK FPD  VLGWYS G++  AT+     
Sbjct: 69  RTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSD--ATE----- 121

Query: 119 GDYTDMQIHQTLMDANGTAFYLLLNPAINFSHKDIPVTIYERVLCNSDGSPPVSFVQGNY 178
              +DM IH+ LMD N +  Y+LLNPAIN + KD+PVTIYE      DG P   FV  +Y
Sbjct: 122 ---SDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSY 178

Query: 179 TVEIVGAERISLDHADFLYPS 199
           T+E V AERIS+DH   L PS
Sbjct: 179 TIETVEAERISVDHVAHLKPS 199



>AT5G27120.1 | chr5:9541287-9543684 FORWARD LENGTH=534
          Length = 533

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 26/186 (13%)

Query: 221 MLFETPSGFAMFRV-SDVLFRYPEDIWSSFTDPHTAHQVVRTIGFIEVGDKSVVWDNDIG 279
           +LFETP GFA+F+V ++      ED+ + F+    A ++V+ + F    DK   +DN   
Sbjct: 3   ILFETPGGFAIFKVLNEGKLSNVEDLGNEFSTAKLARKMVKLVAF----DK---FDNTAE 55

Query: 280 PGEDIEHFILKFPIK-------------SLVVPDAQLKFIIEKNLNISCWFNGRIVPELI 326
             E +   +   P K             +L V D++L  II++ L I C  N  ++ EL+
Sbjct: 56  ALEAVAKLLEGTPSKGLRKFLKANCVGETLAVADSKLGNIIKEKLKIVCVHNNAVM-ELL 114

Query: 327 WGLNYALDEFVPREKGNLSNERHFPLSKQLHEQLKAYGFSISPQLINREFITSFGYLNYL 386
            G+   L E +      L ++   P+S  L   L  Y    S   ++   I + G L+ L
Sbjct: 115 RGIRSQLTELIS----GLGDQDLGPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDL 170

Query: 387 ERTSNC 392
           ++  N 
Sbjct: 171 DKELNT 176



>AT3G05060.1 | chr3:1413174-1415564 REVERSE LENGTH=534
          Length = 533

 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 12/179 (6%)

Query: 221 MLFETPSGFAMFRVSDV-LFRYPEDIWSSFTDPHTAHQVVRTIGFIEVGDKSVVWDN--- 276
           +L+ET +GFA+F+V D       ED+   F  P +A ++V+   F +  + S   +    
Sbjct: 4   VLYETAAGFALFKVKDEGKMANVEDLCKEFDTPDSARKMVKLKAFEKFDNTSEALEAVAK 63

Query: 277 --DIGPGEDIEHFI-LKFPIKSLVVPDAQLKFIIEKNLNISCWFNGRIVPELIWGLNYAL 333
             +  P + +  F+      ++L V D++L  +I++ L I C  N  ++ EL+ G+    
Sbjct: 64  LLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKIDCIHNNAVM-ELLRGVRSQF 122

Query: 334 DEFVPREKGNLSNERHFPLSKQLHEQLKAYGFSISPQLINREFITSFGYLNYLERTSNC 392
            E +      L ++   P+S  L   L  Y    S   ++   I + G L+ L++  N 
Sbjct: 123 TELIS----GLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNT 177



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,540,350
Number of extensions: 521953
Number of successful extensions: 929
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 4
Length of query: 499
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 396
Effective length of database: 8,282,721
Effective search space: 3279957516
Effective search space used: 3279957516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)