BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0613600 Os12g0613600|AK111002
(427 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G30320.1 | chr1:10680348-10682852 FORWARD LENGTH=510 170 1e-42
AT2G02170.1 | chr2:556595-558610 REVERSE LENGTH=487 149 2e-36
AT1G67590.1 | chr1:25333137-25334472 REVERSE LENGTH=348 100 3e-21
AT1G53860.1 | chr1:20107165-20109458 REVERSE LENGTH=443 66 4e-11
AT5G23750.1 | chr5:8010004-8011453 REVERSE LENGTH=203 53 3e-07
>AT1G30320.1 | chr1:10680348-10682852 FORWARD LENGTH=510
Length = 509
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 135/240 (56%), Gaps = 24/240 (10%)
Query: 195 AVSMRDVGTEMTPMASKEQSRSGTPAGAATPSLSPLCSVPTSPRG--------XXXXXXX 246
+V MRD+GTEMTP+ S+E SRS TP GA TP SP S+P++PRG
Sbjct: 284 SVCMRDMGTEMTPIPSQEPSRSVTPVGATTPLRSPTSSLPSTPRGGQPEESSMSKNTRRE 343
Query: 247 XXERELQIRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEKXXXXXXXXHSGDGGG 306
E E + +TRREI ALG+QLGKMNIA+WASK ++GD
Sbjct: 344 LSEEEEKAKTRREIVALGVQLGKMNIAAWASK--------------EEEENKKNNGDAE- 388
Query: 307 EAKKREFEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQAEQMKA 366
EA+K EFE RA AW+E K K R++R+E++IQ WES +KAK EA+MR E + EQMKA
Sbjct: 389 EAQKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAEMRRIEAKVEQMKA 448
Query: 367 RAKQKLSRRLSALSHKAEGKQARVEXXXXXXXXXXXXXVHRIRETGAAP-SRLRRCCSWL 425
A+ K+ ++++ ++E K+A E IRETG P S + CC W
Sbjct: 449 EAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGRIPASSYKICCGWF 508
>AT2G02170.1 | chr2:556595-558610 REVERSE LENGTH=487
Length = 486
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 137/250 (54%), Gaps = 39/250 (15%)
Query: 191 SEAAAVSMRDVGTEMTPMASKEQSRSGTPAGAATP----------------SLSPLCSVP 234
S A +VSMRD+GTEMTP+AS+E SR+GTP A TP S SP+ +
Sbjct: 258 STARSVSMRDMGTEMTPIASQEPSRNGTPIRATTPIRSPISSEPSSPGRQASASPMSNKE 317
Query: 235 TSPRGXXXXXXXXXERELQIRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEKXXX 294
S E+ELQ++TRREI LG QLGK NIA+WASK+D+D+ S +
Sbjct: 318 LS------------EKELQMKTRREIMVLGTQLGKFNIAAWASKEDEDKDASTSLKTKAS 365
Query: 295 XXXXXHSGDGGGEAKKREFEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKM 354
+ K EARA AW+E K K RF+R+E+KIQ WE+ QKAK EA+M
Sbjct: 366 L-----------QTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEM 414
Query: 355 RHAEVQAEQMKARAKQKLSRRLSALSHKAEGKQARVEXXXXXXXXXXXXXVHRIRETGAA 414
+ EV+ E++K RA+ +L ++L+ + KAE K+A E +IR TG
Sbjct: 415 KKTEVKVERIKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKV 474
Query: 415 PSRLRRCCSW 424
PS L C S+
Sbjct: 475 PSLLFSCFSF 484
>AT1G67590.1 | chr1:25333137-25334472 REVERSE LENGTH=348
Length = 347
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 41/227 (18%)
Query: 195 AVSMRDVGTEMTPMASKEQSRSGTPAGAATP-SLSPLCSVPTSPRGXXXXXXXXXERELQ 253
+V +RD+GTEMTP+ S+E SR+ TP A TP SP+ TSP
Sbjct: 146 SVCVRDMGTEMTPIGSQEPSRTATPVRATTPVGRSPV----TSP---------------- 185
Query: 254 IRTRREIAALGLQLGKMNIASWASKDDDDELPRASPEKXXXXXXXXHSGDGGGEAKK--R 311
+R + A+G+ + + ++ +++ +G E+KK
Sbjct: 186 VRASQRGEAVGVVMETVTEVRRVESNNSEKV------------------NGFVESKKAMS 227
Query: 312 EFEARAMAWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQAEQMKARAKQK 371
EARAMAW E + K R++R+EVKIQ WE+ +K K E +M+ EV+AE+MKARA++K
Sbjct: 228 AMEARAMAWDEAERAKFMARYKREEVKIQAWENHEKRKAEMEMKKMEVKAERMKARAEEK 287
Query: 372 LSRRLSALSHKAEGKQARVEXXXXXXXXXXXXXVHRIRETGAAPSRL 418
L+ +L+A AE ++A E IR +G PS
Sbjct: 288 LANKLAATKRIAEERRANAEAKLNEKAVKTSEKADYIRRSGHLPSSF 334
>AT1G53860.1 | chr1:20107165-20109458 REVERSE LENGTH=443
Length = 442
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 113/291 (38%), Gaps = 45/291 (15%)
Query: 124 RQVPSKWNDAEKWLAGR------HVVHSNP----------IFSKKXXXXXXXVSGXXXXX 167
R PSKW DAEKW+ H + +N ++S+K G
Sbjct: 119 RNFPSKWIDAEKWVTSSGHDSPAHSLKNNQFDGFKHQVEVVYSEKSRVTEECFHGSVSLS 178
Query: 168 XXXXXXXXXXXXX-------------XXXXKRLRVSSEAAAVSMRDVGTEMTPMASKEQS 214
K LR E A V RD+GTEMTP+ S S
Sbjct: 179 PQDLILKDKLANEVPQILPSTEGFIFKDSDKFLRY--EEAQVQHRDMGTEMTPIGSVTTS 236
Query: 215 RSGTPAGAATPSLSPLCSVPTSPRGXXXXXXXXXERELQIRTRREIAALGLQLGKMNIAS 274
R TP +++P+ S + P E E ++R + Q +
Sbjct: 237 RCHTPFKSSSPARHNTPSQLSGPLTETKNVIDISEFEDKLRLS---GSSTSQYCYSVTSH 293
Query: 275 WASKDDDDELPRASPEKXXXXXXXXHSGDGGGEAKKREFEARAMAWQ-ETHKCKLALRFQ 333
W S++ E+ D E ++ E++A W E K K R+Q
Sbjct: 294 WNSRE----------EEEEEISKSLRHFDMESELRRSVSESKAPLWDDEDDKIKFCQRYQ 343
Query: 334 RKEVKIQEWESCQKAKFEAKMRHAEVQAEQMKARAKQKLSRRLSALSHKAE 384
R+E KIQ W + + AK EA+ R EV+ ++M++ ++KL +R+ + +AE
Sbjct: 344 REEAKIQAWVNLENAKAEAQSRKLEVKIQKMRSNLEEKLMKRMDMVHRRAE 394
>AT5G23750.1 | chr5:8010004-8011453 REVERSE LENGTH=203
Length = 202
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%)
Query: 319 AWQETHKCKLALRFQRKEVKIQEWESCQKAKFEAKMRHAEVQAEQMKARAKQKLSRRLSA 378
AW+E KCK+ + ++K I WE+ +KA EA+++ E Q E+ KA +++ +++
Sbjct: 99 AWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQ 158
Query: 379 LSHKAEGKQARVEXXXXXXXXXXXXXVHRIRETGAAPSRLRRC 421
+ +AE K+A +E + R TG AP +L C
Sbjct: 159 IHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGC 201
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.129 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,373,595
Number of extensions: 252293
Number of successful extensions: 715
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 11
Length of query: 427
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 326
Effective length of database: 8,337,553
Effective search space: 2718042278
Effective search space used: 2718042278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)