BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0605400 Os12g0605400|AK068060
(146 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36060.2 | chr2:15143012-15143998 REVERSE LENGTH=147 250 2e-67
AT3G52560.4 | chr3:19494678-19495954 REVERSE LENGTH=165 236 4e-63
AT1G23260.1 | chr1:8257209-8258573 REVERSE LENGTH=159 219 5e-58
AT1G70660.1 | chr1:26640755-26641949 FORWARD LENGTH=160 218 7e-58
AT1G50490.1 | chr1:18705005-18706303 REVERSE LENGTH=181 50 6e-07
AT1G14400.1 | chr1:4927294-4928136 REVERSE LENGTH=153 49 8e-07
AT2G02760.1 | chr2:774271-775149 FORWARD LENGTH=153 49 8e-07
AT3G20060.1 | chr3:7002927-7004283 REVERSE LENGTH=182 48 2e-06
AT3G46460.1 | chr3:17096120-17097315 REVERSE LENGTH=167 48 2e-06
AT5G59300.1 | chr5:23919868-23921304 REVERSE LENGTH=204 47 5e-06
>AT2G36060.2 | chr2:15143012-15143998 REVERSE LENGTH=147
Length = 146
Score = 250 bits (639), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 116/143 (81%), Positives = 128/143 (89%), Gaps = 1/143 (0%)
Query: 5 GDPSAVVVPRNFRXXXXXXRGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHN-TVHEG 63
G S+VVVPRNFR RGEKGIGDG+VSYGMDD DDIYMRSWTGTIIGPHN TVHEG
Sbjct: 4 GSGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVTVHEG 63
Query: 64 RIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEAILT 123
RIYQLKLFCDKDYP++PPTV+FHSRINMTCVN + G+VD +KF +L+NW+R+YTME ILT
Sbjct: 64 RIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILT 123
Query: 124 QLKKEMAASHNRKLVQPPEGTFF 146
QLKKEMAASHNRKLVQPPEGTFF
Sbjct: 124 QLKKEMAASHNRKLVQPPEGTFF 146
>AT3G52560.4 | chr3:19494678-19495954 REVERSE LENGTH=165
Length = 164
Score = 236 bits (601), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 112/157 (71%), Positives = 123/157 (78%), Gaps = 18/157 (11%)
Query: 8 SAVVVPRNFRXXXXXXRGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHN--------- 58
S+VVVPRNFR RGEKGIGDG+VSYGMDD DDIYMRSWTGTIIGPHN
Sbjct: 8 SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNIMPLLLLLV 67
Query: 59 ---------TVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLL 109
TVHEGRIYQLKLFCDKDYP++PPTV+FHSR+NM CVN E G+VD +KF LL
Sbjct: 68 VTEINFMSQTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLL 127
Query: 110 SNWRREYTMEAILTQLKKEMAASHNRKLVQPPEGTFF 146
+NW+REYTME IL QLKKEM+ SHNRKLVQPPEGT F
Sbjct: 128 ANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEGTCF 164
>AT1G23260.1 | chr1:8257209-8258573 REVERSE LENGTH=159
Length = 158
Score = 219 bits (557), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 115/140 (82%)
Query: 4 SGDPSAVVVPRNFRXXXXXXRGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHNTVHEG 63
S + + VVVPRNFR RGEKGIGDG+VSYGMDDADDIYM+SWTGTI+GP NT +EG
Sbjct: 2 SSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEG 61
Query: 64 RIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEAILT 123
+I+QLKLFC K+YP+ PPTV+F +RINM CVNPE G+V+ F +L+NWRREYTME IL
Sbjct: 62 KIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILV 121
Query: 124 QLKKEMAASHNRKLVQPPEG 143
+LKKEM SHNRKL QPPEG
Sbjct: 122 KLKKEMMTSHNRKLAQPPEG 141
>AT1G70660.1 | chr1:26640755-26641949 FORWARD LENGTH=160
Length = 159
Score = 218 bits (556), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 99/134 (73%), Positives = 112/134 (83%)
Query: 10 VVVPRNFRXXXXXXRGEKGIGDGSVSYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLK 69
VVVPRNFR RGEKGIGDG+VSYGMDDADDI M+SWTGTI+GPHNT +EG+I+QLK
Sbjct: 8 VVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLK 67
Query: 70 LFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSLLSNWRREYTMEAILTQLKKEM 129
LFC KDYP+ PPTV+F SRINM CVNPENG+VD F +LSNWRRE+TME +L QLKKEM
Sbjct: 68 LFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEM 127
Query: 130 AASHNRKLVQPPEG 143
+S NRKL QP EG
Sbjct: 128 MSSQNRKLAQPLEG 141
>AT1G50490.1 | chr1:18705005-18706303 REVERSE LENGTH=181
Length = 180
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 40 DADDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENG 99
+ D+I+ W GTI G +TV EG Y+L L DYP +PP VKF + C +P
Sbjct: 60 EEDNIFC--WKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFET----CCFHPNVD 113
Query: 100 LVDQRKFSLLSN-WRREYTMEAILTQLK 126
+ +L + W Y + IL ++
Sbjct: 114 VYGNICLDILQDKWSSAYDVRTILLSIQ 141
>AT1G14400.1 | chr1:4927294-4928136 REVERSE LENGTH=153
Length = 152
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 49 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSL 108
W I GP +T +G ++L L +DYP++PPTV+F SR+ + + + +
Sbjct: 36 WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSIC----LDI 91
Query: 109 LSN-WRREYTMEAILTQLK 126
L N W Y + AILT ++
Sbjct: 92 LQNQWSPIYDVAAILTSIQ 110
>AT2G02760.1 | chr2:774271-775149 FORWARD LENGTH=153
Length = 152
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 49 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLVDQRKFSL 108
W I GP +T +G ++L L +DYP++PPTV+F SR+ + + + +
Sbjct: 36 WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSIC----LDI 91
Query: 109 LSN-WRREYTMEAILTQLK 126
L N W Y + AILT ++
Sbjct: 92 LQNQWSPIYDVAAILTSIQ 110
>AT3G20060.1 | chr3:7002927-7004283 REVERSE LENGTH=182
Length = 181
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 40 DADDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENG 99
+ D+I+ W GTI G +TV EG Y+L L DYP + P VKF + C +P
Sbjct: 61 EEDNIF--CWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFET----CCFHPNVD 114
Query: 100 LVDQRKFSLLSN-WRREYTMEAILTQLK 126
L +L + W Y + IL ++
Sbjct: 115 LYGNICLDILQDKWSSAYDVRTILLSIQ 142
>AT3G46460.1 | chr3:17096120-17097315 REVERSE LENGTH=167
Length = 166
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 35 SYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCV 94
S G+ D +I+ W+ TIIGP +T++EG + + ++YP+ PPTV+F S I V
Sbjct: 25 SAGLVDEKNIF--EWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNV 82
Query: 95 NPENGLV---------DQRKFSLLSN-WRREYTMEAILTQL 125
P+ + D + L S W +T+E+I+ +
Sbjct: 83 YPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSI 123
>AT5G59300.1 | chr5:23919868-23921304 REVERSE LENGTH=204
Length = 203
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 16/103 (15%)
Query: 35 SYGMDDADDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPTVKFHS------- 87
S G+ D +I+ W+ TIIGP +T++EG + + ++YP+ PPTV+F S
Sbjct: 62 SAGLVDEKNIF--EWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNV 119
Query: 88 ----RINMTCVNPENGLVDQRKFSLLSN-WRREYTMEAILTQL 125
R+ ++ ++P D + L S W +T+E+I+ +
Sbjct: 120 YSDGRVCISILHPPGD--DPSGYELASERWTPVHTVESIMLSI 160
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,559,833
Number of extensions: 146730
Number of successful extensions: 301
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 10
Length of query: 146
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 57
Effective length of database: 8,666,545
Effective search space: 493993065
Effective search space used: 493993065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)