BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0604200 Os12g0604200|J065098L17
(82 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G43870.1 | chr5:17632538-17635863 REVERSE LENGTH=454 85 7e-18
AT3G22810.1 | chr3:8068595-8071559 FORWARD LENGTH=473 83 3e-17
AT4G14740.1 | chr4:8450567-8453946 REVERSE LENGTH=476 75 6e-15
AT3G63300.1 | chr3:23385033-23387625 FORWARD LENGTH=499 67 3e-12
AT4G32785.1 | chr4:15811086-15811743 FORWARD LENGTH=125 50 2e-07
>AT5G43870.1 | chr5:17632538-17635863 REVERSE LENGTH=454
Length = 453
Score = 85.1 bits (209), Expect = 7e-18, Method: Composition-based stats.
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 25 WPGRHLLEGGEHRRYFGLRTAEHRVIEFECGSQREHDMWTKGVARLLATIDGRRKR 80
WPGR +LEGGE+ RYFGL+T E RVIEFEC SQRE+D+WT+GV+ LL+ R+ +
Sbjct: 397 WPGREMLEGGENLRYFGLKTVEKRVIEFECKSQREYDLWTQGVSMLLSIASDRKHK 452
>AT3G22810.1 | chr3:8068595-8071559 FORWARD LENGTH=473
Length = 472
Score = 83.2 bits (204), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 44/57 (77%)
Query: 25 WPGRHLLEGGEHRRYFGLRTAEHRVIEFECGSQREHDMWTKGVARLLATIDGRRKRF 81
WPGRHLLEGGE RYFGL+T ++EF+C SQRE++MWT+GV+RL+A R R+
Sbjct: 414 WPGRHLLEGGEDLRYFGLKTVPRGIVEFQCKSQREYEMWTQGVSRLIAVAAERNNRY 470
>AT4G14740.1 | chr4:8450567-8453946 REVERSE LENGTH=476
Length = 475
Score = 75.5 bits (184), Expect = 6e-15, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 25 WPGRHLLEGGEHRRYFGLRTAEHRVIEFECGSQREHDMWTKGVARLLATIDGRRKR 80
WPGRHLLEGG+ RYFGL+T +EFE SQRE++MWT+GV+RLL R+ R
Sbjct: 419 WPGRHLLEGGDDLRYFGLKTVMRGDVEFEVKSQREYEMWTQGVSRLLVLAAERKFR 474
>AT3G63300.1 | chr3:23385033-23387625 FORWARD LENGTH=499
Length = 498
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 25 WPGRHLLEGGEHRRYFGLRTAEHRVIEFECGSQREHDMWTKGVARLLATIDGRRKR 80
W GR L G +H YFGL+T RVIEFEC +QRE+++WT+GV+RLLA ++++
Sbjct: 435 WAGRDLFNGDKHH-YFGLKTETKRVIEFECRNQREYEIWTQGVSRLLAIAAEKKQK 489
>AT4G32785.1 | chr4:15811086-15811743 FORWARD LENGTH=125
Length = 124
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Query: 35 EHRRYFGLRTAEHRVIEFECGSQREHDMWTKGVARLLATID 75
E R YFG++T E RVIEFECG++RE MW +G+ +LL +++
Sbjct: 76 ERRAYFGVKTVE-RVIEFECGNKREKQMWIEGIQQLLNSLE 115
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.143 0.495
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,350,405
Number of extensions: 36327
Number of successful extensions: 77
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 5
Length of query: 82
Length of database: 11,106,569
Length adjustment: 53
Effective length of query: 29
Effective length of database: 9,653,521
Effective search space: 279952109
Effective search space used: 279952109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)