BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0600200 Os12g0600200|AK122147
(394 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G30580.1 | chr2:13026444-13030363 FORWARD LENGTH=421 231 6e-61
AT1G06770.1 | chr1:2079222-2081707 REVERSE LENGTH=422 225 4e-59
AT3G23060.1 | chr3:8200868-8203116 FORWARD LENGTH=481 74 1e-13
AT5G13250.1 | chr5:4234486-4241615 FORWARD LENGTH=388 74 1e-13
AT1G28080.1 | chr1:9789826-9790918 FORWARD LENGTH=292 51 1e-06
>AT2G30580.1 | chr2:13026444-13030363 FORWARD LENGTH=421
Length = 420
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 149/387 (38%), Positives = 206/387 (53%), Gaps = 18/387 (4%)
Query: 13 CLHYAVCRKCIYKKINDEELEHCPVCKIDLGCAPLEKLRADHNIQDVRSKIFPLKRKKVN 72
CLH CRKCIY+KI ++E+E CPVC IDLG PLEKLR DH +QD+R+K+FPLKRKK
Sbjct: 36 CLH-TFCRKCIYEKITEDEIESCPVCDIDLGGTPLEKLRPDHILQDLRAKLFPLKRKKER 94
Query: 73 AEEVESPIAPPAKRKERSISSLVVNTPEITPKSLTGXXXXXXXXXXXXXLRDLGPIIP-P 131
A EV S I+ PAKRKERSISSLVV+TP ++ ++ G +R G
Sbjct: 95 APEVVSSISLPAKRKERSISSLVVSTPRVSAQA--GTTGKRTKAATRKDVRGSGSFTKRT 152
Query: 132 VKKDSDNTNKNADNXXXXXXXXKVPQTRRQVLSNAETXXXXXXXXXXXXXXXXXXXELWR 191
VKK+ + + + ++ K Q +RQ LW+
Sbjct: 153 VKKEEEFGDDHVESASSPETLKKFTQNKRQSSYANPNQSLSNRRNKDVDEPWDSKLHLWK 212
Query: 192 PLNCLVEAASKTKSYRSSSAARGNQPTESPSSANASRTKAREYLLKSKVQDEKKE----- 246
PLN LV+ A+ TK +S GN S + S+TK +++ K K+++E
Sbjct: 213 PLNFLVDVANGTKDPKSE---LGNA---SHNDVQGSKTKTKDHKRKCKLEEEISNNGDPT 266
Query: 247 -VPVATVPFKRKGPGRGRKXXXXXXX-XXXXXXXXKHEKLLTPVWFSLIASFDQKGAPPL 304
AT+ R+ + K E+ VWFSL+AS +Q+G L
Sbjct: 267 TSETATLKRTRRTRRKRSSTFGDSRIPLLPGAASLKQERRNGHVWFSLVASSNQEGEASL 326
Query: 305 PQIPTHYLRIKDDNMPASSIQKYIMQKLSLPSETEVEISCCGQPVNPIQPLRNLIERWLR 364
PQIP +YLRI+D N+P S IQKY+M+KL L SE EVEI+C G+PV P L +L++ WL
Sbjct: 327 PQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSEDEVEITCMGEPVIPTLQLHSLVDLWLE 386
Query: 365 -FGPARTLQTVVGSSGGDYVMVISYGR 390
+ + +GSS ++VMV+ Y R
Sbjct: 387 TTSKHQRVAASIGSSAKEFVMVLVYSR 413
>AT1G06770.1 | chr1:2079222-2081707 REVERSE LENGTH=422
Length = 421
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 149/401 (37%), Positives = 203/401 (50%), Gaps = 41/401 (10%)
Query: 13 CLHYAVCRKCIYKKINDEELEHCPVCKIDLGCAPLEKLRADHNIQDVRSKIFPLKRKKVN 72
CLH CRKCIY+KI ++E+E CPVC IDLG PLEKLR DHN+QD+R+KIF LKR+KV
Sbjct: 32 CLH-TFCRKCIYEKITEDEIETCPVCNIDLGSTPLEKLRPDHNLQDLRAKIFALKRRKVK 90
Query: 73 AEEVESPIAPPAKRKERSISSLVVNTPEITPKSLTGXXXXXXXXXXXXXLRDLGPIIPPV 132
A + ++ P KRKERSISSLVV+TP ++ ++ G LR+ V
Sbjct: 91 APGI---VSLPGKRKERSISSLVVSTPMVSAQA--GTTRRRTKAPTRKELRNGSLAERTV 145
Query: 133 KKDSDNTNKNADNXXXXXXXXKVPQTRRQV-------LSNAETXXXXXXXXXXXXXXXXX 185
KK+ + ++ ++ K Q +RQ +SN E
Sbjct: 146 KKEESSGDELLESTSSPDTLNKFTQNKRQSKKSCKESISNKENKDGDEPWDSKMD----- 200
Query: 186 XXELWRPLNCLVEAASKTKSYRSSSAARGNQPTESPSSANASRTKAR-------EYLLKS 238
W+PLN LVE A+ TK +SS++ +E AN SR + + K
Sbjct: 201 ----WKPLNFLVEVANGTKPLKSSASQGSGSKSEH---ANVSRNQFQGSKTKTKNKKRKC 253
Query: 239 KVQDEKKE-----VPVATVPFKRKGPGRGRKXXXXXXXXXX---XXXXXKHEKLLTPVWF 290
K +D+K P + + R R K E+ PVWF
Sbjct: 254 KREDDKSNNGDPTTSETVTPKRMRTTQRKRSATTLGDSRNLPQPDESSAKQERRNGPVWF 313
Query: 291 SLIASFDQKGAPPLPQIPTHYLRIKDDNMPASSIQKYIMQKLSLPSETEVEISCCGQPVN 350
SL+AS DQ+G LPQIP ++LRI+D N S IQKY+M+KL L SE E+EI C G+ V
Sbjct: 314 SLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLESENEIEIKCMGEAVI 373
Query: 351 PIQPLRNLIERWL-RFGPARTLQTVVGSSGGDYVMVISYGR 390
P L NL++ WL + + +VGSS D+ MV+ Y R
Sbjct: 374 PTLTLYNLVDLWLQKSSNHQRFAALVGSSAKDFTMVLVYAR 414
>AT3G23060.1 | chr3:8200868-8203116 FORWARD LENGTH=481
Length = 480
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 287 PVWFSLIASFDQKGAPPLPQIPTHYLRIKDDNMPASSIQKYIMQKLSLPSETEVEISCCG 346
PVWFSL S Q LP I +R+KD NM S ++KY+M KL L SE +VEI
Sbjct: 364 PVWFSLKPSKTQNIEMLLPPITACCIRVKDSNMTVSYLKKYLMVKLGLESEDQVEIWLRD 423
Query: 347 QPVNPIQPLRNLIERWLRFGPARTLQT-VVGSSGGDYVMVISYG 389
+PV L NL++ W++ P Q+ +VGSS +++M + Y
Sbjct: 424 EPVCSSLTLHNLVDWWVQTTPLPERQSAMVGSSAAEFIMDLYYS 467
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 13 CLHYAVCRKCIYKKINDEELEHCPVCKIDLGCAPLEKLRADHNIQDVRSKIF 64
CLH CR CI K +E + CPVC ++LG PLEKLR+D QD++ KI+
Sbjct: 32 CLH-TFCRSCIRNKFINERVNACPVCNVNLGVFPLEKLRSDCTWQDLKLKIY 82
>AT5G13250.1 | chr5:4234486-4241615 FORWARD LENGTH=388
Length = 387
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 288 VWFSLIASFDQKGAPPLPQIPTHYLRIKDDNMPASSIQKYIMQKLSLPSET-EVEISCCG 346
+WF L AS +Q P LPQIP YLRIKD M + KY++ KL L E+ +VEI C G
Sbjct: 276 IWFLLQASQNQTVEPFLPQIPKSYLRIKDGKMTVRLLMKYLVNKLRLEHESQQVEIRCRG 335
Query: 347 QPVNPI---QPLRNLIERWLR--FGPARTLQTVVGSSGGDYVMVISYGR 390
Q + P+ Q +R+ I R R ++ + + SS D++MV+ YGR
Sbjct: 336 QELEPVLTLQHVRDAIWRGSRDTSSLSQNITLLPNSSTSDHLMVLHYGR 384
>AT1G28080.1 | chr1:9789826-9790918 FORWARD LENGTH=292
Length = 291
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 35/55 (63%)
Query: 288 VWFSLIASFDQKGAPPLPQIPTHYLRIKDDNMPASSIQKYIMQKLSLPSETEVEI 342
+WF L AS Q+ P LPQ+ YLRIKD + + KY+M+KL L SE+EV I
Sbjct: 237 LWFLLQASQFQEREPFLPQVNKSYLRIKDGRITVRLLIKYLMKKLELDSESEVNI 291
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,748,822
Number of extensions: 290031
Number of successful extensions: 975
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 967
Number of HSP's successfully gapped: 6
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 113 (48.1 bits)