BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0597800 Os12g0597800|AK108042
         (122 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G06500.1  | chr2:2580718-2583223 REVERSE LENGTH=583            111   8e-26
AT4G10200.1  | chr4:6353172-6355591 FORWARD LENGTH=734             93   3e-20
AT2G19960.1  | chr2:8622215-8622736 FORWARD LENGTH=174             91   1e-19
AT2G16040.1  | chr2:6976017-6977594 FORWARD LENGTH=383             85   9e-18

>AT2G06500.1 | chr2:2580718-2583223 REVERSE LENGTH=583
          Length = 582

 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 83/119 (69%), Gaps = 1/119 (0%)

Query: 5   SNVEINDFYSELKVLQVSLSDSSMSAPGILKFFMDAD-FYKNVSVAYRILLTVHVTVASA 63
           S+++  D + ELKVL+  L +       +L F    +  Y N  +++RILLT+ V+VASA
Sbjct: 463 SDIDGADLFMELKVLREVLPNEVTKPIKVLDFLKRVEGCYPNTWISFRILLTILVSVASA 522

Query: 64  ERSFSKLKLLKNYLRSTKSQERLNGLTMCLIKKDILDTIDLNTVLDDFASRNARRSIFS 122
           ERSFSKLKL+KNYLRST SQ+RLNGL +  I++ +L+ ID  TV+DDFA +NA R IF+
Sbjct: 523 ERSFSKLKLIKNYLRSTMSQDRLNGLAILSIERAMLEKIDYATVMDDFAGKNASRIIFT 581



>AT4G10200.1 | chr4:6353172-6355591 FORWARD LENGTH=734
          Length = 733

 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 64/80 (80%)

Query: 43  YKNVSVAYRILLTVHVTVASAERSFSKLKLLKNYLRSTKSQERLNGLTMCLIKKDILDTI 102
           Y N  +A+R++LTV V+VASAERSFSKLKL+K+Y RST S+ERLN L +  I++D++  +
Sbjct: 648 YPNTWIAFRVMLTVPVSVASAERSFSKLKLIKSYSRSTMSEERLNALAILSIERDLVGEL 707

Query: 103 DLNTVLDDFASRNARRSIFS 122
           D  ++++DFA++ ARRSIF 
Sbjct: 708 DYISLMNDFAAKTARRSIFE 727



>AT2G19960.1 | chr2:8622215-8622736 FORWARD LENGTH=174
          Length = 173

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 75/118 (63%), Gaps = 1/118 (0%)

Query: 2   STSSNVEINDFYSELKVLQVSLSDSSMSAPGILKFFMDAD-FYKNVSVAYRILLTVHVTV 60
            T S++  +D + ELK+L+ +L         +L F    +  Y N  +AY++LLT+ V+V
Sbjct: 53  GTHSDILASDLFYELKILREALPKEVRRPIEVLDFLQKVEGCYPNSWIAYQVLLTIPVSV 112

Query: 61  ASAERSFSKLKLLKNYLRSTKSQERLNGLTMCLIKKDILDTIDLNTVLDDFASRNARR 118
           ASAERSFSKLKL+K+YLRS+ SQERL+ L +  I++ ++  +D   + +DF  +  RR
Sbjct: 113 ASAERSFSKLKLIKSYLRSSMSQERLSDLAILSIERALVREVDFERLANDFVGKKGRR 170



>AT2G16040.1 | chr2:6976017-6977594 FORWARD LENGTH=383
          Length = 382

 Score = 84.7 bits (208), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 61/89 (68%), Gaps = 3/89 (3%)

Query: 5   SNVEINDFYSELKVLQVSLSDSSMSAPGILKFF--MDADFYKNVSVAYRILLTVHVTVAS 62
           S+V+  D + ELK+L+  L         +LKF   MD+  Y N  +AYRILLT+ V+VA 
Sbjct: 292 SDVDGEDLFMELKLLKDVLPKEITKPVEVLKFLKIMDS-CYPNTWIAYRILLTIPVSVAL 350

Query: 63  AERSFSKLKLLKNYLRSTKSQERLNGLTM 91
           AER+FSKLKL+K YLRST SQERLNGL +
Sbjct: 351 AERTFSKLKLIKKYLRSTMSQERLNGLAL 379



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,087,684
Number of extensions: 67397
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 4
Length of query: 122
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 36
Effective length of database: 8,748,793
Effective search space: 314956548
Effective search space used: 314956548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)