BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0596600 Os12g0596600|AK064196
(233 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G50780.1 | chr3:18875662-18877341 REVERSE LENGTH=521 248 2e-66
AT5G60050.1 | chr5:24183680-24185264 REVERSE LENGTH=500 197 4e-51
AT1G63850.1 | chr1:23696962-23698708 FORWARD LENGTH=549 189 2e-48
AT2G13690.1 | chr2:5706704-5708895 REVERSE LENGTH=545 131 3e-31
>AT3G50780.1 | chr3:18875662-18877341 REVERSE LENGTH=521
Length = 520
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 161/228 (70%), Gaps = 2/228 (0%)
Query: 1 IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDGXXXXXXXXXXXXCQGCLDRLRLLFSE 60
I+E+VL+S ++++RREMK++VL LL++ N CQ CLD + LF +
Sbjct: 277 IIELVLRSKEEKSRREMKSIVLKLLREQNGA--NVADNFNDTIYSSCQTCLDSVLSLFKQ 334
Query: 61 ATGQEFSVELTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGKLPVASRH 120
A+ E T+QI +E DNL WL+++L ++ ++F WANQ ++A LH KLP+ SR+
Sbjct: 335 ASEGEKPETDTKQIAVEADNLTWLLDVLAERQAAEEFSVTWANQKELALLHEKLPLMSRY 394
Query: 121 TVSCITARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWLQCSCRSFDRKLVEEGIG 180
+S +T+RLF+GIGRGE+LPSK+TR +DY+WLQ CRSFD KLVEEGIG
Sbjct: 395 HISRVTSRLFIGIGRGELLPSKDTRLLLLTTWLQPLFNDYNWLQHGCRSFDGKLVEEGIG 454
Query: 181 QTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVRPY 228
+TILTLPLEDQ+S+LL+WLG FL GD CPNLQRAFEVWWRR+F+RPY
Sbjct: 455 RTILTLPLEDQQSILLSWLGSFLNGGDGCPNLQRAFEVWWRRSFIRPY 502
>AT5G60050.1 | chr5:24183680-24185264 REVERSE LENGTH=500
Length = 499
Score = 197 bits (501), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 143/233 (61%), Gaps = 11/233 (4%)
Query: 5 VLKSTDDRARREMKALVLNLLKDSNHCTDGXXXXXXXXXXXXCQGCLDRLRLLFSEATGQ 64
VL++ DD+ARREMK L+ L+++ + C CL L L SE T Q
Sbjct: 261 VLQAKDDKARREMKVLIFKLVRE-----EADYDVSRDTLYGLCHRCLTSLVLCLSEVTTQ 315
Query: 65 -----EFSVELTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGKLPVASR 119
+ L +I E DN+LW+V+IL+ +++C +FV LWA+Q ++A LH K+P R
Sbjct: 316 MNDPGKDRGALMGEIAREADNMLWMVDILIEKKLCSEFVKLWADQKELANLHSKIPTMYR 375
Query: 120 HTVSCITARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWL-QCSCRSFDRKLVEEG 178
H +S ITA++ VGIG+G +L ++ TR DD+ W+ + S RS DRKLVE+G
Sbjct: 376 HEISKITAQICVGIGKGRILVNRETRFAVLNTWLEALYDDFGWMRRLSSRSLDRKLVEDG 435
Query: 179 IGQTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVRPYVSQ 231
+ QTILTL L Q+ +L+ W RFL GD+CPN+QRAFEVWWRR F+R +++
Sbjct: 436 LSQTILTLSLRQQQVILMKWFDRFLSKGDDCPNVQRAFEVWWRRAFIRQVLTE 488
>AT1G63850.1 | chr1:23696962-23698708 FORWARD LENGTH=549
Length = 548
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 141/226 (62%), Gaps = 6/226 (2%)
Query: 1 IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDGXXXXXXXXXXXXCQGCLDRLRLLFSE 60
++ +VL+ D++ARR+MK LV +L++++ D C GCL +L+ F +
Sbjct: 308 LLHIVLEGKDEKARRDMKTLVSKMLRENSSGND----LRKESLYLACDGCLHKLKRQFLQ 363
Query: 61 ATGQEFSVELTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGKLPVASRH 120
A E +E QI + DNL W+++IL++++I +DF+ +WA+ S+++E+H K+PV R
Sbjct: 364 AA--ESDLENVDQIARQADNLHWILDILIDRQIAEDFIVMWASLSELSEVHSKVPVVHRF 421
Query: 121 TVSCITARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWLQCSCRSFDRKLVEEGIG 180
+S +TAR+FVGIG+G++L K R DD+ W++ + + DR L+E+G+
Sbjct: 422 EISRVTARIFVGIGKGQILTPKEVRCLLLRNWLTPFYDDFGWMRRASKGLDRYLIEDGLS 481
Query: 181 QTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVR 226
TILTLPL Q+ LAW RFL ++CPN+QR FEVWWRR F R
Sbjct: 482 NTILTLPLAWQQEFFLAWFDRFLNSNEDCPNIQRGFEVWWRRAFWR 527
>AT2G13690.1 | chr2:5706704-5708895 REVERSE LENGTH=545
Length = 544
Score = 131 bits (330), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 3/221 (1%)
Query: 9 TDDRARREMKALVLNLLKDSNHCTDGXXXXXXXXXXXXCQGCLDRLRLLFSEATGQEFSV 68
+D R E+K+LV LL S+ + C+D L LF E + S
Sbjct: 316 SDVNPRNELKSLVKGLLCKSSVYEKEQPEINKEDIYRAGKCCVDSLAKLFEEGSSSSSSK 375
Query: 69 ---ELTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGKLPVASRHTVSCI 125
L I+ E +N+ WL+EI++++ I ++FV +W Q ++ E+H ++ R+ VS +
Sbjct: 376 KEKPLIESISREVENINWLLEIMIDREIAEEFVEIWGKQRRLVEMHERVSPMVRYEVSRV 435
Query: 126 TARLFVGIGRGEMLPSKNTRXXXXXXXXXXXIDDYSWLQCSCRSFDRKLVEEGIGQTILT 185
T +F+ +G+ + R + D+ WLQ + D + VEEG+GQT+LT
Sbjct: 436 TGAIFIAMGKRRVQCGGEARAGLVEAWFKPMLVDFGWLQRCKKGLDMREVEEGMGQTLLT 495
Query: 186 LPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVR 226
LP+++Q + + W F K G CPNL +AF++WWRR+F+R
Sbjct: 496 LPVKEQYQVFMEWFRWFSKHGTECPNLSKAFQIWWRRSFLR 536
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,400,035
Number of extensions: 153486
Number of successful extensions: 394
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 4
Length of query: 233
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 138
Effective length of database: 8,502,049
Effective search space: 1173282762
Effective search space used: 1173282762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)