BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0591100 Os12g0591100|Os12g0591100
         (619 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1  | chr4:12129485-12134086 FORWARD LENGTH=1263         194   1e-49
ATMG00810.1  | chrM:227709-228431 REVERSE LENGTH=241              165   6e-41
ATMG00240.1  | chrM:68918-69253 REVERSE LENGTH=112                 61   2e-09
ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               55   1e-07

>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
          Length = 1262

 Score =  194 bits (493), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/323 (35%), Positives = 176/323 (54%), Gaps = 24/323 (7%)

Query: 311 LLVGVYVDDLVITGTKDAEVVAFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITLRQTA 370
           L V VYVDD++I    DA V   K ++K+ F++ DLGPL ++LG+E+ +  +GI + Q  
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRK 337

Query: 371 YAKRVVELAGLTDCNPALTPMEERLKLSRDSTAEEVDATQYRRLVGSLRYLTHTRPDLAF 430
           YA  +++  GL  C P+  PM+  +  S  S  + VDA  YRRL+G L YL  TR D++F
Sbjct: 338 YALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISF 397

Query: 431 SVGYVNRFMQRPTTEHQQAVKRIIRYVAGTLDHGLYYPRCPGKAHFVGYSDSDHAGDIDT 490
           +V  +++F + P   HQQAV +I+ Y+ GT+  GL+Y     +     +SD+      DT
Sbjct: 398 AVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS-QAEMQLQVFSDASFQSCKDT 456

Query: 491 SKSTSGILFFLGKCLVSWQSVKQQVVALSSCEA---------DDLLGRDTGTVELRV--- 538
            +ST+G   FLG  L+SW+S KQQVV+ SS EA         D+++       EL++   
Sbjct: 457 RRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLS 516

Query: 539 -------DSKSALALAKNPVFHERSKHIRVRYHFIRS---YLEEGSIKASYINTKDQLAD 588
                  D+ +A+ +A N VFHER+KHI    H +R    Y    S      + +D   +
Sbjct: 517 KPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLSYSFQAYDEQDGFTE 576

Query: 589 LLTKPLGRIKFLELCSRIGMAQL 611
            L+ P+ R   + + S  G+A L
Sbjct: 577 YLS-PILRGTIMYIVSMFGLAGL 598



>ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241
          Length = 240

 Score =  165 bits (418), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 83/210 (39%), Positives = 132/210 (62%), Gaps = 2/210 (0%)

Query: 315 VYVDDLVITGTKDAEVVAFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITLRQTAYAKR 374
           +YVDD+++TG+ +  +     ++ +TF M DLGP+ ++LGI++    SG+ L QT YA++
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 375 VVELAGLTDCNPALTPMEERLKLSRDSTAEEVDATQYRRLVGSLRYLTHTRPDLAFSVGY 434
           ++  AG+ DC P  TP+  +L  S  STA+  D + +R +VG+L+YLT TRPD++++V  
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123

Query: 435 VNRFMQRPTTEHQQAVKRIIRYVAGTLDHGLYYPRCPGKAHFVGYSDSDHAGDIDTSKST 494
           V + M  PT      +KR++RYV GT+ HGLY  +   K +   + DSD AG   T +ST
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK-NSKLNVQAFCDSDWAGCTSTRRST 182

Query: 495 SGILFFLGKCLVSWQSVKQQVVALSSCEAD 524
           +G   FLG  ++SW + +Q  V+ SS E +
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETE 212



>ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112
          Length = 111

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 420 YLTHTRPDLAFSVGYVNRFMQRPTTEHQQAVKRIIRYVAGTLDHGLYYPRCPGKAHFVGY 479
           YLT TRPDL F+V  +++F     T   QAV +++ YV GT+  GL+Y           +
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYS-ATSDLQLKAF 60

Query: 480 SDSDHAGDIDTSKSTSGI-----LFFLG 502
           +DSD A   DT +S +G      L+FLG
Sbjct: 61  ADSDWASCPDTRRSVTGFCSLVPLWFLG 88



>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 3  RALLKQRGMPVIFWGEAVVTAAYILNRSPTKALDGRTPYEAWHGRKPAVSHLRVFGCLAF 62
          R++L + G+P  F  +A  TA +I+N+ P+ A++   P E W    P  S+LR FGC+A+
Sbjct: 10 RSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVAY 69

Query: 63 AKELGHI--GKLDDRSTPG 79
               H   GKL  R+  G
Sbjct: 70 I----HCDEGKLKPRAKKG 84



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,308,411
Number of extensions: 507065
Number of successful extensions: 978
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 974
Number of HSP's successfully gapped: 4
Length of query: 619
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 514
Effective length of database: 8,227,889
Effective search space: 4229134946
Effective search space used: 4229134946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)