BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0583400 Os12g0583400|AK102589
         (195 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16660.1  | chr5:5465699-5467006 REVERSE LENGTH=169             72   2e-13
AT3G02900.1  | chr3:645850-647445 FORWARD LENGTH=163               67   5e-12

>AT5G16660.1 | chr5:5465699-5467006 REVERSE LENGTH=169
          Length = 168

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 54/87 (62%), Gaps = 9/87 (10%)

Query: 84  YVFAPQISKTLDSLLDENGQDSESDEHGLVKPRYGRYYDEGLEKTRQTLGDKISQLNLAI 143
           Y+FAPQI +   S+L+E       DE+G  KP+   YYDEGLEKTR+TL +KI QLN AI
Sbjct: 87  YIFAPQIRR---SVLNEE------DEYGFEKPKQPTYYDEGLEKTRETLNEKIGQLNSAI 137

Query: 144 DKAASRLKRVAGNVEKEAINDESEIEI 170
           D  +SRL+    N     +  E++ E+
Sbjct: 138 DNVSSRLRGREKNTSSLNVPVETDPEV 164



>AT3G02900.1 | chr3:645850-647445 FORWARD LENGTH=163
          Length = 162

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 44/68 (64%), Gaps = 10/68 (14%)

Query: 84  YVFAPQISKTLDSLLDENGQDSESDEHGLVKPRYGRYYDEGLEKTRQTLGDKISQLNLAI 143
           Y+FAPQI +   S+L EN       E+G  KP    YYDEGLE+ R+ L +KI QLN AI
Sbjct: 78  YIFAPQIRR---SVLSEN-------EYGFKKPEQPMYYDEGLEERREILNEKIGQLNSAI 127

Query: 144 DKAASRLK 151
           DK +SRLK
Sbjct: 128 DKVSSRLK 135



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,713,494
Number of extensions: 131895
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 2
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 109 (46.6 bits)