BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0577800 Os12g0577800|AK068994
(786 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13940.1 | chr1:4762703-4765923 REVERSE LENGTH=1006 80 4e-15
AT1G69360.1 | chr1:26072520-26075420 REVERSE LENGTH=897 72 2e-12
AT1G26620.1 | chr1:9195838-9198719 REVERSE LENGTH=868 67 5e-11
AT5G07790.1 | chr5:2484073-2486107 FORWARD LENGTH=617 59 1e-08
AT5G61300.1 | chr5:24650905-24652776 REVERSE LENGTH=558 56 7e-08
AT5G67390.1 | chr5:26887883-26888512 REVERSE LENGTH=177 53 7e-07
>AT1G13940.1 | chr1:4762703-4765923 REVERSE LENGTH=1006
Length = 1005
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 82/133 (61%), Gaps = 10/133 (7%)
Query: 1 MGTKVESKTYLPGYF-TMADSSVNSNG--NWLSYHEESKPSGHVSDSFTIT--TANASPD 55
MGTKV ++ GY +M D + SN W ++ ++K S +D T+ +
Sbjct: 1 MGTKVHCESLFGGYHHSMGDLNKESNNGCRWPLFYGDNKTSASNNDQCYNNGFTSQTTFG 60
Query: 56 YDKEMLKRTMLVHEATFRKQVYELHRLYKTQKDLMAQFQREECNGYPRSADMLQARSYSS 115
+DK++++RTML HEA F+ QV ELHR+Y+TQKD+M + +R++ N + ++A S SS
Sbjct: 61 FDKDVVRRTMLEHEAVFKTQVLELHRVYRTQKDMMDELKRKQFN---KEWVQIEA-SLSS 116
Query: 116 QATSRDVKRVWQV 128
QAT+ DV++ W++
Sbjct: 117 QATNDDVRK-WKI 128
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 86/196 (43%), Gaps = 34/196 (17%)
Query: 534 LIDLNAAPSMDEPDID----------VHQSEGGTVPQQPDDPSEDSLARTAAESLVAL-- 581
+IDL P D+ + D V E T+ + P+ + AAE++VA+
Sbjct: 707 MIDLETVPESDDEEEDGNISGEKRSEVKSIEEKTLEKPPE------FEKLAAETIVAIYS 760
Query: 582 -CKDV---FQAGSPLAD--ILHWFADLAIASKXXXXXXXXXXXXXXXXX--------XLT 627
C D A S +++ ILHWFA+ K +T
Sbjct: 761 ACLDREVEVVASSEVSETIILHWFAETVNTHKENLDKKLDTFSRNQSRSIEDIDYFESMT 820
Query: 628 LQLEETKGYELYSTPKTPVEHKSNEDHGSVAASLLQTKPRRGRARKRPQKKDFQKDILPN 687
LQL + E P P K E G+ A + +PRRG ARK Q++DFQ+DILP
Sbjct: 821 LQLPDISEQEYMPKPLVPENLKLEETTGT--ALVTSQRPRRGNARKGKQRRDFQRDILPG 878
Query: 688 LASLSKHEVSEDLHTL 703
L SLSKHEV+ED+
Sbjct: 879 LLSLSKHEVTEDIQMF 894
>AT1G69360.1 | chr1:26072520-26075420 REVERSE LENGTH=897
Length = 896
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 36/204 (17%)
Query: 528 DANARNLIDLNAAPSMDEPDIDVHQSEGGTVPQQPDDP--SEDSLARTAAESLVAL---- 581
+ A LI++ A +++ + EGG P++ D+ S D L AAE++V +
Sbjct: 618 ETKATTLINVEAPLTLES------EEEGGKFPEKRDEAGDSVDELIEAAAEAIVTISLSY 671
Query: 582 -CKDVFQAGSPLADI-----LHWFADLAI---------------ASKXXXXXXXXXXXXX 620
C++ +A S D L WF + A
Sbjct: 672 HCRNTDEAASSSTDAVDKEPLSWFVNTIASCGNDLESKIDACLEARDCEGCREECSSGEF 731
Query: 621 XXXXXLTLQLEETKGYELYSTPKTPVEHKSNEDHGSVAASLLQTKPRRGRARKRPQKKDF 680
+TL L +TK + P P K + G+ + + +PRRG+AR+ K+DF
Sbjct: 732 DYFEAMTLNLTQTKEEDYMPKPLIPEYLKFD---GTGSMGITSNRPRRGQARRGRPKRDF 788
Query: 681 QKDILPNLASLSKHEVSEDLHTLG 704
Q+DILP LASLS+ EV+EDL G
Sbjct: 789 QRDILPGLASLSRLEVTEDLQMFG 812
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 49/191 (25%)
Query: 1 MGTKVESKTYLPGYFTMADSSVNSNGNWLSYH-----EESKPSGHVSDSFTITTANASPD 55
MG V ++L +++ N+ SY +++ P G + F+ S
Sbjct: 1 MGETVHCGSFLSSMRDLSEDISNT----CSYSMYCGGDKTLPYGQYQNGFSARPPTDS-- 54
Query: 56 YDKEMLKRTMLVHEATFRKQVYELHRLYKTQKDLMAQFQREECNGYPRSADMLQARSYSS 115
Y+++ LK+TML HEA F+ QVYELHRLY+TQK LMA+ ++ +++
Sbjct: 55 YERDFLKQTMLEHEAVFKNQVYELHRLYRTQKSLMAE---------------VKGKNFVD 99
Query: 116 QATSRDVKRVWQVMPPTSGNDIKQSSINFAKGSEYARNGAPLMNNNNGRSTK-------- 167
+ + PT G+ IK+ F G+ G+ + N G+ K
Sbjct: 100 HLNNNE---------PTPGSGIKRG---FLFGNSICGEGSTSQDCNVGKDNKVLEVRPVK 147
Query: 168 ---KMLDLQLP 175
M+DLQLP
Sbjct: 148 VRRTMIDLQLP 158
>AT1G26620.1 | chr1:9195838-9198719 REVERSE LENGTH=868
Length = 867
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 46/208 (22%)
Query: 531 ARNLIDLNAAPSMDEPD-----IDVHQSEGGTVPQQPDDPSEDSLARTAAESLVALCKDV 585
AR IDL A P+++ + D E + Q D S + L + AAE++VA+
Sbjct: 588 ARTWIDLEAPPTLESEEEGDNSQDKTNEETWRMMQGQDGNSMNELIKVAAEAIVAISMAG 647
Query: 586 FQ--------------AGSPLADILHWFADLAI---------------ASKXXXXXXXXX 616
Q + SPL+ WFA++ A+
Sbjct: 648 HQRHPDDAASSSTDAASKSPLS----WFAEIITSCGDELERKIDGSPEATDFEGNREDYS 703
Query: 617 XXXXXXXXXLTLQLEETKGYELYSTPKTPVEHKSNEDHGSVAASLLQTKPRRGRARKRPQ 676
+TL ++ETK + P P E+ ED KPRRG+AR+
Sbjct: 704 SGEIDYFEAMTLNIQETKEEDYMPEPLVP-ENLKFED-------TCINKPRRGQARRGRP 755
Query: 677 KKDFQKDILPNLASLSKHEVSEDLHTLG 704
K+DFQ+D LP L+SLS+HEV+ED+ G
Sbjct: 756 KRDFQRDTLPGLSSLSRHEVTEDIQMFG 783
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 56 YDKEMLKRTMLVHEATFRKQVYELHRLYKTQKDLMAQFQREECNGYPRSADMLQARSYSS 115
Y+K+ +K TML HEA F+ QV+ELHRLY+ QK+L+ EE G + M + ++S
Sbjct: 13 YEKDFMKHTMLEHEAVFKNQVHELHRLYRVQKNLV-----EEVKGKNLNEVMNVSDHHTS 67
Query: 116 QATSRDVKRVWQVMPPTSGNDIKQSSINFAKGSEYARNGAPLMNNNNGRSTK---KMLDL 172
+ S+ +++ + P S + S A G+ + + GR K +M+DL
Sbjct: 68 ENESK--RKLHGFLLPNS--TCGEGSSTQASNGRLQNGGSSNGDASEGRDVKGRRRMIDL 123
Query: 173 QLP 175
QLP
Sbjct: 124 QLP 126
>AT5G07790.1 | chr5:2484073-2486107 FORWARD LENGTH=617
Length = 616
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 40 HVSDSFTITTANASPDYDKEMLKRTMLVHEATFRKQVYELHRLYKTQKDLMAQFQ 94
HV D+F+ ++ KE L+ TMLVHE+ F Q+ ELHRLY+ QK+LM + +
Sbjct: 41 HVDDTFSFLYSDLYLRQVKEALRHTMLVHESVFESQICELHRLYRKQKELMMEME 95
>AT5G61300.1 | chr5:24650905-24652776 REVERSE LENGTH=558
Length = 557
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
Query: 58 KEMLKRTMLVHEATFRKQVYELHRLYKTQKDLMAQFQREECNGYPRS--ADMLQARSYSS 115
KE LK+TML E+ F Q+YELHRLY+ QKDLM + E + +P + + ++R +
Sbjct: 36 KETLKQTMLGQESVFETQIYELHRLYQRQKDLMMDME-ETQHLFPNAGVSSPRRSRHWMG 94
Query: 116 QATSRDVKRVWQVMPPTSGNDIKQSSINFAKGSEYARNGAPLMNNNNGRSTKKMLDLQLP 175
+ S VW P++ D A + N G+S +K+LD +LP
Sbjct: 95 SSISTSKTSVWPPEDPSAKID-----------------EAGISGNEIGKSGEKVLDFELP 137
>AT5G67390.1 | chr5:26887883-26888512 REVERSE LENGTH=177
Length = 176
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 56 YDKEMLKRTMLVHEATFRKQVYELHRLYKTQKDLMAQFQ 94
YDK+ +K ML HE TF++QVYELHRLY+ QK LM +
Sbjct: 8 YDKQCMKMAMLKHEETFKQQVYELHRLYQVQKILMKNME 46
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.126 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,766,999
Number of extensions: 655304
Number of successful extensions: 1461
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1460
Number of HSP's successfully gapped: 9
Length of query: 786
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 680
Effective length of database: 8,200,473
Effective search space: 5576321640
Effective search space used: 5576321640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)