BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0563400 Os12g0563400|AK067785
(625 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09280.1 | chr1:2998209-3001253 REVERSE LENGTH=582 709 0.0
AT2G40760.1 | chr2:17010050-17011968 FORWARD LENGTH=475 115 6e-26
AT1G17850.2 | chr1:6146470-6148820 REVERSE LENGTH=449 82 8e-16
AT4G24380.1 | chr4:12612554-12613586 FORWARD LENGTH=235 57 2e-08
AT5G65400.1 | chr5:26131448-26133062 FORWARD LENGTH=253 55 1e-07
>AT1G09280.1 | chr1:2998209-3001253 REVERSE LENGTH=582
Length = 581
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/599 (58%), Positives = 437/599 (72%), Gaps = 40/599 (6%)
Query: 28 VLLYYKYAEVPDAAALAAFYESHCRALALVGRVRVGPDGVNATLGGRMAALEKHVAEMSS 87
VLLYYKY VPD L +FYES C +L L+GRVR+ P GVN T+GG++ ALE+H+A S
Sbjct: 22 VLLYYKYTSVPDLDELVSFYESSCNSLGLLGRVRLSPKGVNVTVGGKLTALEEHIAAAKS 81
Query: 88 NALFDGTDFKLASCDDPVDERVARECGFTSLSVRLVKELVTLCANPSLATPQITCAGRHL 147
N LF+GTDFKLASC P++++VA ECGFTSLS+R+V+ELVT P L P+I+ AG+HL
Sbjct: 82 NCLFEGTDFKLASCHHPLNDKVAEECGFTSLSIRVVEELVTFSPCPPLKPPEISNAGKHL 141
Query: 148 SAAEFHSVLQSVAGATSDSEATVEKSEVVVLDARNVYETRIGKFRVPNVETLDPEIRQYS 207
SAAEFHSVLQS G + E E+V+LDARN+YETRIGKF NVETLDPEIRQYS
Sbjct: 142 SAAEFHSVLQSANGKS-------ENKELVLLDARNLYETRIGKFESENVETLDPEIRQYS 194
Query: 208 DLPLWIDEHAEKLRGKSIMMYCTGGIRCEMASAYIRSKGEGFENVFQLYGGIQRYLERFP 267
DLP WID++AEK++GK+++MYCTGGIRCEMASAYIRSKG GFEN FQLYGGIQRYLE+FP
Sbjct: 195 DLPTWIDQNAEKMKGKNVLMYCTGGIRCEMASAYIRSKGAGFENTFQLYGGIQRYLEQFP 254
Query: 268 DGGYFEGKNFVFDHRISVGSLKENILGTCLLCGSSFDDYSPRCRCSHCRMLVLVCSTCQD 327
GG+F+GKNFVFDHRISVGS KE+I+G+CLLC ++FDDYSPRCRC CRMLVLVC+ C+
Sbjct: 255 SGGFFKGKNFVFDHRISVGSSKEDIIGSCLLCNNTFDDYSPRCRCRLCRMLVLVCNHCRV 314
Query: 328 STKDYVCELCQKNGKQCCQTSPRQGCKTESELIDSSDFGIPMIINQSATSTIPRSNGSEQ 387
Y+CELC+K+GK E+ S D +NQ + SNG
Sbjct: 315 KGDIYICELCRKHGK--------------GEVPLSLD-----PLNQPS-----ESNGDNT 350
Query: 388 LKKLKILCLHGFRQNASNFKGRTSALAKKLKHIADLVFIDAPHELSFVYKPNPDHCSGRS 447
+KL+ILCLHGFRQNAS+FKGRT +LAKKLK+IA+LVFIDAPHEL F+Y+ +
Sbjct: 351 RRKLRILCLHGFRQNASSFKGRTGSLAKKLKNIAELVFIDAPHELQFIYQ--------TA 402
Query: 448 SLPSGTPKRKYAWLVAPNSIFYAEHDWKIADAPFDPLQYQQQTDGFEESYAYLEHAISQM 507
+ PSG +K+AWLV+ + +E W +A FDPLQYQ QT+GF++S YL+ A +
Sbjct: 403 TPPSGVCNKKFAWLVSSDFDKPSETGWTVAQCQFDPLQYQTQTEGFDKSLTYLKTAFEEK 462
Query: 508 GNIDGILGFSQGAAMAALFCRQQQKTCGSLKFRFGIFCSGY-PAPIISDFDGEPIKLPSL 566
G DGILGFSQGAAMAA C +Q++ G + FRF + CSG+ P P++ + IK PSL
Sbjct: 463 GPFDGILGFSQGAAMAAAVCGKQEQLVGEIDFRFCVLCSGFTPWPLLEMKEKRSIKCPSL 522
Query: 567 HCFGNSEDHDRQIANRASTELANRFDKSCRSVIEHDMGHIIPTRPPFIDKIKEFLSNFI 625
H FG+ DRQI +AS++LA F+ C +++EHD GHIIPT+ P+ID+IK FL FI
Sbjct: 523 HIFGSQPGKDRQIVTQASSDLAGLFEDGCATIVEHDFGHIIPTKSPYIDEIKAFLYQFI 581
>AT2G40760.1 | chr2:17010050-17011968 FORWARD LENGTH=475
Length = 474
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 148/326 (45%), Gaps = 75/326 (23%)
Query: 28 VLLYYKYAEVPDAAALAAFYESHCRALALVGRVRVGPDGVNATLGGRMAALEKHVAEMSS 87
V+ +YK+A+ P+ A + C L + G + + P+G+N ++ G ++E+ +A +
Sbjct: 106 VVSFYKFADFPEHADFRKPLKDLCEKLRVSGGIILAPEGINGSICGIRESVEEVLAFIQR 165
Query: 88 NALFDGTDFKLASCDDPVD-ERVARECGFTSLS----------------VRLVKELVTLC 130
+ +G L + PV E+ A G +S S V+L KE+VTL
Sbjct: 166 DVRLNG----LRQVETPVSPEQEAIHHGHSSSSPLAAGEDAPFRWDHVRVKLKKEIVTL- 220
Query: 131 ANPSLATPQITCAGRHLSAAEFHSVLQSVAGATSDSEATVEKSEVVVLDARNVYETRIGK 190
PS++ I G ++S E++ ++ E VV+D RN YETRIGK
Sbjct: 221 GIPSVSP--IERVGTYVSPEEWNELISD--------------PETVVIDVRNTYETRIGK 264
Query: 191 FRVPNVETLDPEIRQYSDLPLWID----------------------------EHAEKLRG 222
F+ +DP + + P W++ + AEK +
Sbjct: 265 FK----GAVDPCTTAFRNFPSWVENQFALKQEGNETQAKVEKEDFSEITHKEDKAEKPKT 320
Query: 223 -KSIMMYCTGGIRCEMASAYIRSKGEGFENVFQLYGGIQRYLERFPDG-GYFEGKNFVFD 280
I MYCTGGIRCE AS+ + S +GFE V+ L GGI +YLE P +EG+ FVFD
Sbjct: 321 LPRIAMYCTGGIRCEKASSLLLS--QGFEEVYHLKGGILKYLEEVPKTESLWEGECFVFD 378
Query: 281 HRISVG-SLKENILGTCLLCGSSFDD 305
R+SV L + C C D
Sbjct: 379 KRVSVEHGLAQGTHKLCYGCKQPISD 404
>AT1G17850.2 | chr1:6146470-6148820 REVERSE LENGTH=449
Length = 448
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 142/353 (40%), Gaps = 65/353 (18%)
Query: 28 VLLYYKYAEVPDAAALAAFYESHCRALALVGRVRVGPDGVNATLGGRMAALEKHVAEMSS 87
V+ +Y++ + D A + S + L + GR+ + G+NA G +V +
Sbjct: 85 VVNFYRFVSIGDPEAEIEKHLSFLKDLNIRGRIYLNEQGINAQYSGPSKDALAYVEWLKG 144
Query: 88 NALFDGTDFKLASCDDPVDERVARECGFTSLSVRLVKELVT----LCANPSLATPQITCA 143
+ F +++ P R A F L ++ LV + P L P
Sbjct: 145 DDRFSDLLVQMS----PAMNRHA----FPKLKLQNKPSLVQYEGGISHLPLLDPPM---R 193
Query: 144 GRHLSAAEFHSVLQSVAGATSDSEATVEKS--EVVVLDARNVYETRIGKFR---VPNVET 198
+ L +E+ L+ + T D EA+ S ++LD RN YE +G FR P V+
Sbjct: 194 AKPLEPSEWKRKLKDL---TDDDEASPSNSGKSYILLDVRNGYEWDVGHFRGAHRPEVDC 250
Query: 199 -------LDPEIRQYSDLPLWIDEHAEKLRGKSIMMYCTGGIRCEMASAYIRSKGEGFEN 251
L E SD + +D+ I+MYCTGGIRC++ S +R + GF+N
Sbjct: 251 FRNTSFGLSDEKEAPSDPLINVDKEK-----TDILMYCTGGIRCDVYSTVLRQR--GFKN 303
Query: 252 VFQLYGGIQRYLERFPDGGYFEGKNFVFDHRISV--GSLKENIL---------------- 293
++ L GG+ YL+ + G FVFD R+S+ + +N++
Sbjct: 304 LYTLKGGVSHYLKEEGTAEWV-GNLFVFDSRLSLPPAAYNDNVVDKAVGDNVVDEAGRTP 362
Query: 294 --------GTCLLCGSSFDDYSPR-CRCSHCRMLVLVCSTCQDSTKDYVCELC 337
C LC S + R C C L L C+ C K C C
Sbjct: 363 QTPVDTSFARCYLCNSQVQELRHRNCANLDCNRLFLCCAECVVDLKGCCCSDC 415
>AT4G24380.1 | chr4:12612554-12613586 FORWARD LENGTH=235
Length = 234
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 88/233 (37%), Gaps = 44/233 (18%)
Query: 382 SNGSEQLKKLKILCLHGFRQNASNFKGRTSALAKKLKHIADLVFIDAPHELSFVYKPNPD 441
S G +K + LCLHGFR + K + K + DLVF+DAP
Sbjct: 3 SEGRSIARKPRFLCLHGFRTSGEIMKIQLHKWPKSVIDRLDLVFLDAPFP---------- 52
Query: 442 HCSGRSSLPSGTPKRKYAWLVAPNSIFYAEHDWKIADAPFDPLQYQQQTDGFEESYAYLE 501
C G+S + Y W ++ + T+ FE+ YLE
Sbjct: 53 -CQGKSDVEGIFDPPYYEWFQFNK-------------------EFTEYTN-FEKCLEYLE 91
Query: 502 HAISQMGNIDGILGFSQGAAMAALFCRQQQKTCGSL---KFRFGIFCSG---YPAPIISD 555
+ ++G DG++GFSQGA ++ Q K K +F I G A + +
Sbjct: 92 DRMIKLGPFDGLIGFSQGAILSGGLPGLQAKGIAFQKVPKIKFVIIIGGAKLKSAKLAEN 151
Query: 556 FDGEPIKLPSLHCFGNSEDHDRQIANRASTELANRFDKSCRSVIEHDMGHIIP 608
++ SLH G ++ T+L + V+ H GH +P
Sbjct: 152 AYSSSLETLSLHFLGETD-----FLKPYGTQLIESYKNPV--VVHHPKGHTVP 197
>AT5G65400.1 | chr5:26131448-26133062 FORWARD LENGTH=253
Length = 252
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 96/255 (37%), Gaps = 59/255 (23%)
Query: 389 KKLKILCLHGFRQNASNFKGRTSALAKKLKHIADLVFIDAPHELSFVYKPNPDHCSGRSS 448
K +ILCLHGFR + + + DL F+DAP +G+S
Sbjct: 28 KNPRILCLHGFRTSGRILQAGIGKWPDTILRDLDLDFLDAPFP-----------ATGKSD 76
Query: 449 LPSGTPKRKYAWLVAPNSIFYAEHDWKIADAPFDPLQYQQQTDGFEESYAYLEHAISQMG 508
+ Y W A N F ++ FEE AY+E + + G
Sbjct: 77 VERFFDPPYYEWYQA-NKGF-------------------KEYRNFEECLAYIEDYMIKNG 116
Query: 509 NIDGILGFSQGAAMAALFCRQQQKTCGSL---KFRFGIFCSGY---------PAPIISDF 556
DG+LGFSQGA + A Q++ K +F + SG P ++ F
Sbjct: 117 PFDGLLGFSQGAFLTAAIPGMQEQGSALTKVPKVKFLVIISGAKIPGLMFGEPKAAVNAF 176
Query: 557 DGEPIKLPSLHCFGNSEDHDRQIANRASTELANRFDKSCRSVIEHDMGHIIP-------- 608
P++ PSLH G +R L F + VI H GHIIP
Sbjct: 177 S-SPVRCPSLHFIG-----ERDFLKIEGEVLVESFVEPV--VIHHSGGHIIPKLDTKAEE 228
Query: 609 TRPPFIDKIKEFLSN 623
T F I++ LS+
Sbjct: 229 TMLSFFQSIRQMLSD 243
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,064,528
Number of extensions: 613401
Number of successful extensions: 1487
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1473
Number of HSP's successfully gapped: 5
Length of query: 625
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 520
Effective length of database: 8,227,889
Effective search space: 4278502280
Effective search space used: 4278502280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)