BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0556100 Os12g0556100|J065083C21
(186 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G49230.1 | chr5:19959048-19960422 REVERSE LENGTH=212 113 5e-26
AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224 91 3e-19
AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201 87 5e-18
AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223 81 3e-16
AT1G02750.1 | chr1:602673-604134 FORWARD LENGTH=222 64 6e-11
AT4G02200.3 | chr4:972776-974203 FORWARD LENGTH=229 59 1e-09
AT3G06760.2 | chr3:2132971-2134355 FORWARD LENGTH=235 50 8e-07
>AT5G49230.1 | chr5:19959048-19960422 REVERSE LENGTH=212
Length = 211
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 86/149 (57%), Gaps = 20/149 (13%)
Query: 43 CPFCDEEFDGFGLCCHIEDEHQAENRAGVCPICYDAVGMDLVSHITSEHPSFFKGKWRNR 102
CPFC +EFD GLCCHI+ H E + GVCP+C VG+D+V HIT++H + FK + R R
Sbjct: 45 CPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQ-RRR 103
Query: 103 RVSHGSHSSTRATLKKDA--AYLQYRYGGSTRAASHNTDPDPLLSSFV-----------G 149
R+ G +SST TLKK+ A LQ G ST S N D DPLLSSF+ G
Sbjct: 104 RLRKGGYSSTYLTLKKELREANLQSLGGSSTFIPSSNIDSDPLLSSFMFKPPSAIPITEG 163
Query: 150 NFTDTDLPKD-----VQQE-FRDETDEKS 172
+ PKD +QQE F +E EK+
Sbjct: 164 DSVAQVSPKDTSKSKIQQESFSNEDQEKA 192
>AT3G05700.1 | chr3:1682432-1684323 REVERSE LENGTH=224
Length = 223
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 82/162 (50%), Gaps = 10/162 (6%)
Query: 1 MDMDSW-ERLAADARLQGSCFDAL--IXXXXXXXXXXXXXXXXVACPFCDEEFDGFGLCC 57
MD DSW +RLA+ R F + ACPFC + FD LCC
Sbjct: 1 MDSDSWSDRLASATRRYQLAFPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVSLCC 60
Query: 58 HIEDEHQAENRAGVCPICYDAVGMDLVSHITSEHPSFFKGKWRNRRVSHGSHSSTRATLK 117
HI+++H E + GVCP+C VG+D+V+HIT +H + FK R R+ G ST + L+
Sbjct: 61 HIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFK-MHRKRKPRRGGSYSTLSILR 119
Query: 118 KDA--AYLQYRYGG----STRAASHNTDPDPLLSSFVGNFTD 153
++ Q +GG + ++S N DPLLSSF+ D
Sbjct: 120 REFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFISPIAD 161
>AT1G56280.1 | chr1:21073366-21074725 REVERSE LENGTH=201
Length = 200
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 65/112 (58%), Gaps = 11/112 (9%)
Query: 42 ACPFCDEEFDGFGLCCHIEDEHQAENRAGVCPICYDAVGMDLVSHITSEHPSFFKGKWRN 101
ACPFC E +D GLCCHI+DEH E++ VCP+C VG+D+V+ H F G+ R
Sbjct: 36 ACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVA-----HKRFTMGRKRK 90
Query: 102 RRVSHGSHSSTRATLKKDA--AYLQYRYGGSTRAAS--HNTDPDPLLSSFVG 149
R S +ST + L+K+ LQ G ++R S + PDPLLSSF+
Sbjct: 91 SRKS--GTNSTLSLLRKELREGDLQRLLGFTSRNGSVASSVTPDPLLSSFIS 140
>AT5G26990.1 | chr5:9491366-9493639 FORWARD LENGTH=223
Length = 222
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 42 ACPFCDEEFDGFGLCCHIEDEHQAENRAGVCPICYDAVGMDLVSHITSEHPSFFKGKWRN 101
ACPFC + FD LCCHI+++H + + GVCPIC V D+++HIT +H + FK R
Sbjct: 45 ACPFCSDYFDIVSLCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVT-RK 103
Query: 102 RRVSHGSHSSTRATLKKDA--AYLQYRYGGS---TRAASHNTDPDPLLSSFVGNFTD 153
R+ G S + LK++ Q + G+ ++S + DPLLSSF+ D
Sbjct: 104 RKSRRGGAQSMLSILKREFPDGNFQSLFEGTSRAVSSSSASIAADPLLSSFISPMAD 160
>AT1G02750.1 | chr1:602673-604134 FORWARD LENGTH=222
Length = 221
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 43 CPFCDEEFDGFGLCCHIEDEHQAENRAGVCPICYDAVGMDLVSHITSEHPSFFKGKWRNR 102
CPFC ++D LC HI++EH+ E G+CP+C V M +V HITS H K + +
Sbjct: 49 CPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLKSEQKEM 108
Query: 103 RVSHGSHSSTRATLKKDAAYLQYRYGGSTRAASHNTDPDPLLS-SFVGNFTDTDLPKDVQ 161
+ S + YLQ + +H+ P +S F+ ++ LP +
Sbjct: 109 SYREDPYLSDK--------YLQPHLDELPPSMNHHQHPSKHVSDQFLSFINNSALPNQTK 160
Query: 162 QEFRDETDEKSDSL 175
D + E + +
Sbjct: 161 LVLPDSSVEDKNPI 174
>AT4G02200.3 | chr4:972776-974203 FORWARD LENGTH=229
Length = 228
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 26/151 (17%)
Query: 43 CPFCDEEFDGFGLCCHIEDEHQAENRAG--------------VCPICYDAVGMDLVSHIT 88
CPFC +++D LC HI++EHQ + G +CP+C V M +V HIT
Sbjct: 45 CPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVCSRRVKMHMVDHIT 104
Query: 89 SEHPSFFKGKWRNRRVSHGSHSSTRATLKKDAAYLQYRYGG--STRAASHNTDPDPLLSS 146
++H FK +++ S S + + YLQ ST S + DPLL S
Sbjct: 105 TQHRDVFKRLYKDESYSAFSPGTRK--------YLQSLIDEPLSTNHTSKSV-LDPLL-S 154
Query: 147 FVGNFTDTDLPKDVQQEFRDETDEKSDSLVQ 177
F+ N K VQ + E + +SL++
Sbjct: 155 FIYNPPSPKKSKLVQPDSSSEASMEDNSLIR 185
>AT3G06760.2 | chr3:2132971-2134355 FORWARD LENGTH=235
Length = 234
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 43 CPFCDEEFDGFGLCCHIEDEHQAENRAGVCPICYDAVGMDLVSHITSEHPSFFKGKWRNR 102
CPFC E+FD GLCCHI++EH E + GV V + + R
Sbjct: 49 CPFCAEDFDIVGLCCHIDEEHPVEAKNGVDQFFALVVIQCCNFWFIPCESNLGIFRLFGR 108
Query: 103 RVSHG---------SHSSTRATLKKDA--AYLQ-YRYGGSTRAASHNTDPDPLLSSFVGN 150
V + +SST LKK+ A LQ G S+ +S N D DPLLSSF+ N
Sbjct: 109 SVLYALRGRRLRRGGYSSTYLALKKELREANLQSLLGGSSSFTSSTNIDSDPLLSSFMFN 168
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,056,655
Number of extensions: 163582
Number of successful extensions: 476
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 7
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)