BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0541500 Os12g0541500|AK067367
(1123 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29060.1 | chr4:14317744-14321315 FORWARD LENGTH=954 604 e-173
AT4G11120.1 | chr4:6778066-6779934 FORWARD LENGTH=396 81 3e-15
AT5G30510.1 | chr5:11619262-11621223 REVERSE LENGTH=417 60 7e-09
AT3G11964.1 | chr3:3793957-3806626 REVERSE LENGTH=1897 54 5e-07
AT3G03710.1 | chr3:919542-924906 FORWARD LENGTH=923 51 5e-06
>AT4G29060.1 | chr4:14317744-14321315 FORWARD LENGTH=954
Length = 953
Score = 604 bits (1558), Expect = e-173, Method: Compositional matrix adjust.
Identities = 301/433 (69%), Positives = 341/433 (78%), Gaps = 3/433 (0%)
Query: 691 LVKQLREATGAGMMDCKKALAESGGDIEKAQEFXXXXXXXXXXXXXXXXXXEGRIGSYIH 750
LVKQLRE TGAGMMDCK AL+ES GD+ KAQE+ EGRIG+YIH
Sbjct: 523 LVKQLREETGAGMMDCKNALSESEGDMVKAQEYLRKKGLASADKKASRATSEGRIGAYIH 582
Query: 751 DSRIGVLIEVNCETDFVSRGDIFKELVDDLAMQVAACPQVQYISLDDVPEEVMKKETELE 810
DSRIGVL+EVNCETDFVSRGDIFKELVDDLAMQVAACPQV+Y+ +DV EE++KKE E+E
Sbjct: 583 DSRIGVLLEVNCETDFVSRGDIFKELVDDLAMQVAACPQVEYLVTEDVSEEIVKKEKEIE 642
Query: 811 MQREDLLSKPEQIRSKIVEGRVKKRLGEYALLEQPFIKNDKVTISEWVKQTIATIGENMK 870
MQ+EDLLSKPEQIR KIV+GR+KKRL ALLEQP+IK+DKV + + VKQ IATIGEN+K
Sbjct: 643 MQKEDLLSKPEQIREKIVDGRIKKRLDSLALLEQPYIKDDKVIVKDLVKQRIATIGENIK 702
Query: 871 VNRFVRYNLGEGLEKRSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAISA 930
V RFVRY LGEGLEK+SQ +SA
Sbjct: 703 VKRFVRYTLGEGLEKKSQDFAAEVAAQTAAKPKAKEEPKAEEAKEAVASPPT---TVVSA 759
Query: 931 ALVKQLRDETGAGMMDCKKALAETGGDIQQAQEFLRKKGLSSADKKSSRLTAEGLIGAYI 990
ALVKQLR+ETGAGMMDCKKALA TGGD+++AQEFLRKKGLSSADKKSSRL +EG IG+YI
Sbjct: 760 ALVKQLREETGAGMMDCKKALAATGGDLEKAQEFLRKKGLSSADKKSSRLASEGRIGSYI 819
Query: 991 HDNRIGCMIEINSETDFVARNEKFKELVNDLAMQVVACPQVEYVSIEDIPESVVIKEKEI 1050
HD+RIG +IE+N ETDFV R+EKFKELV+DLAMQ VA PQV+YVSIEDIPE + KEKEI
Sbjct: 820 HDSRIGVLIEVNCETDFVGRSEKFKELVDDLAMQAVANPQVQYVSIEDIPEEIKQKEKEI 879
Query: 1051 EMQREDLQSKPENIREKIVEGRISKRLGVLALLEQPFIKDDSKTVKDLVKETIATLGENI 1110
EMQREDL SKPENIREKIVEGRISKRLG ALLEQP+IKDDS VKDLVK+T+ATLGENI
Sbjct: 880 EMQREDLLSKPENIREKIVEGRISKRLGEWALLEQPYIKDDSVLVKDLVKQTVATLGENI 939
Query: 1111 KVRRFTRYTLGEN 1123
KVRRF ++TLGE+
Sbjct: 940 KVRRFVKFTLGED 952
Score = 301 bits (772), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/196 (73%), Positives = 169/196 (86%)
Query: 927 AISAALVKQLRDETGAGMMDCKKALAETGGDIQQAQEFLRKKGLSSADKKSSRLTAEGLI 986
IS ALVKQLR+ETGAGMMDCK AL+E+ GD+ +AQE+LRKKGL+SADKK+SR T+EG I
Sbjct: 518 GISPALVKQLREETGAGMMDCKNALSESEGDMVKAQEYLRKKGLASADKKASRATSEGRI 577
Query: 987 GAYIHDNRIGCMIEINSETDFVARNEKFKELVNDLAMQVVACPQVEYVSIEDIPESVVIK 1046
GAYIHD+RIG ++E+N ETDFV+R + FKELV+DLAMQV ACPQVEY+ ED+ E +V K
Sbjct: 578 GAYIHDSRIGVLLEVNCETDFVSRGDIFKELVDDLAMQVAACPQVEYLVTEDVSEEIVKK 637
Query: 1047 EKEIEMQREDLQSKPENIREKIVEGRISKRLGVLALLEQPFIKDDSKTVKDLVKETIATL 1106
EKEIEMQ+EDL SKPE IREKIV+GRI KRL LALLEQP+IKDD VKDLVK+ IAT+
Sbjct: 638 EKEIEMQKEDLLSKPEQIREKIVDGRIKKRLDSLALLEQPYIKDDKVIVKDLVKQRIATI 697
Query: 1107 GENIKVRRFTRYTLGE 1122
GENIKV+RF RYTLGE
Sbjct: 698 GENIKVKRFVRYTLGE 713
Score = 246 bits (629), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 135/263 (51%), Positives = 176/263 (66%), Gaps = 30/263 (11%)
Query: 124 GRNIRKSEMPPLNDEDLVPGASFTGKVRSIKPFGVFVDIGAFTEGLVHISRVSDGFVKDI 183
R RKSEMP + +E+LVPGA+FTGKVR+I+PFG FVD GAFT+GLVH+S++SD FVKD+
Sbjct: 117 ARPGRKSEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDV 176
Query: 184 SSLFTVGQEVSVRLVEANKETGRISLTMRTGGDYVKPKTETPKAASGGRNTTATTSRGSP 243
SS+ T+GQEV VRLVEA+ E+ RISLTMR D PK SGG + P
Sbjct: 177 SSVVTIGQEVKVRLVEADIESKRISLTMRENDD-------PPKRQSGGSD--------KP 221
Query: 244 RQTRERDEAKSMGE-------TNYVQGQFLDGVVKNSTRAGSFVTLPDGSEGFLPREEEA 296
R +RD +K G+ + + +GQ LDGVVKN TR+G+F+T+ +G EGFLP EEA
Sbjct: 222 RSGGKRDGSKGGGQRKGEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFLPTAEEA 281
Query: 297 VALF--TLIGHSALEVGQQVRVKVLNVVRGQVTLTMKEGEDDEEDLASLNTQLKQGWSR- 353
++G S+L+ GQ+V+V+VL + RG+VTLTMK EED + QG
Sbjct: 282 DDGIGSMMMGGSSLQAGQEVKVRVLRIARGRVTLTMK-----EEDDGKFDETTTQGVVHT 336
Query: 354 GTNAFELAFRRNKEISAFLDQRE 376
TN F LAFR+N+EI+AFLD+RE
Sbjct: 337 ATNPFMLAFRKNEEIAAFLDKRE 359
>AT4G11120.1 | chr4:6778066-6779934 FORWARD LENGTH=396
Length = 395
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 32/184 (17%)
Query: 931 ALVKQLRDETGAGMMDCKKALAETGGDIQQAQEFLRKKGLSSADKKSSRLTAEGLIGAYI 990
+L+KQLR+ T A + D K +L E D++ AQ+ LRK+G A KKSSR AEG++
Sbjct: 76 SLIKQLRERTSAPIKDVKASLVECNWDLEAAQKDLRKRGKVLASKKSSRTAAEGMLAVAQ 135
Query: 991 HDNRIGCMIEINSETDFVARNEKFKELVNDLAMQVVACPQVEYVSIEDIPESVVIKEKEI 1050
++ ++ +IE+N ETDFVARNE F+ L LAM + ++ E
Sbjct: 136 NEGKV-AVIELNCETDFVARNEIFQYLA--LAM----------------AKHALLVESSS 176
Query: 1051 EMQREDLQSKPENIREKIVEGRISKRLGVLALLEQPFIKDDSKTVKDLVKETIATLGENI 1110
+ PE E + L+ P + ++ TV + V E A +GEN+
Sbjct: 177 QQVSGVFPFGPELFEEFKLN------------LDHPKVNGET-TVSNAVTEVAAIMGENV 223
Query: 1111 KVRR 1114
K RR
Sbjct: 224 KFRR 227
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 8/149 (5%)
Query: 743 GRIGSYIHDS------RIGVLIEVNCETDFVSRGDIFKELVDDLAMQVAACPQVQYISLD 796
G + +Y+H S RI ++ + E + ++ + + + +LAM V A + ++S D
Sbjct: 237 GVLSAYLHTSPQPGLGRIAGIVSLEVEGE-NTQLEAIQRVGSELAMHVVAAKPL-FLSKD 294
Query: 797 DVPEEVMKKETELEMQREDLLSKPEQIRSKIVEGRVKKRLGEYALLEQPFIKNDKVTISE 856
V E M E E+ + + K + KIVEGR++K E AL+EQ FI ND + I
Sbjct: 295 LVSSEAMANEREILKSQAESTGKNQMAIEKIVEGRLRKYFEEVALMEQKFIVNDAINIKT 354
Query: 857 WVKQTIATIGENMKVNRFVRYNLGEGLEK 885
V +G +KV F+R +GEG+E+
Sbjct: 355 LVDNLSKEVGSPVKVTDFLRVEVGEGIER 383
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 81/186 (43%), Gaps = 38/186 (20%)
Query: 691 LVKQLREATGAGMMDCKKALAESGGDIEKAQEFXXXXXXXXXXXXXXXXXXEGRIGSYIH 750
L+KQLRE T A + D K +L E D+E AQ+ EG + +
Sbjct: 77 LIKQLRERTSAPIKDVKASLVECNWDLEAAQKDLRKRGKVLASKKSSRTAAEGMLAVAQN 136
Query: 751 DSRIGVLIEVNCETDFVSRGDIFKELVDDLAMQVAACPQVQYISLDDVPEEVMKKETELE 810
+ ++ V IE+NCETDFV+R +IF QY++ L
Sbjct: 137 EGKVAV-IELNCETDFVARNEIF-----------------QYLA--------------LA 164
Query: 811 MQREDLL--SKPEQIRSKIVEGRVKKRLGEYAL-LEQPFIKNDKVTISEWVKQTIATIGE 867
M + LL S +Q+ G + E+ L L+ P + N + T+S V + A +GE
Sbjct: 165 MAKHALLVESSSQQVSGVFPFG--PELFEEFKLNLDHPKV-NGETTVSNAVTEVAAIMGE 221
Query: 868 NMKVNR 873
N+K R
Sbjct: 222 NVKFRR 227
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 981 TAEGLIGAYIHDN------RIGCMIEINSETDFVARNEKFKELVNDLAMQVVACPQVEYV 1034
++ G++ AY+H + RI ++ + E + + E + + ++LAM VVA + ++
Sbjct: 234 SSAGVLSAYLHTSPQPGLGRIAGIVSLEVEGE-NTQLEAIQRVGSELAMHVVAAKPL-FL 291
Query: 1035 SIEDIPESVVIKEKEIEMQREDLQSKPENIREKIVEGRISKRLGVLALLEQPFIKDDSKT 1094
S + + + E+EI + + K + EKIVEGR+ K +AL+EQ FI +D+
Sbjct: 292 SKDLVSSEAMANEREILKSQAESTGKNQMAIEKIVEGRLRKYFEEVALMEQKFIVNDAIN 351
Query: 1095 VKDLVKETIATLGENIKVRRFTRYTLGE 1122
+K LV +G +KV F R +GE
Sbjct: 352 IKTLVDNLSKEVGSPVKVTDFLRVEVGE 379
>AT5G30510.1 | chr5:11619262-11621223 REVERSE LENGTH=417
Length = 416
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Query: 143 GASFTGKVRSIKPFGVFVDIGAFTEGLVHISRVSDGFVKDISSLFTVGQEVSVRLVEANK 202
G+ G V+S+KP+G F+DIG GL+H+S++S V DI+++ G + V ++ ++
Sbjct: 264 GSVVLGVVQSLKPYGAFIDIGGIN-GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDR 322
Query: 203 ETGRISLTMR----TGGDYVK-PKTETPKA 227
+ GR+SL+ + T GD ++ PK KA
Sbjct: 323 DRGRVSLSTKKLEPTPGDMIRNPKLVFEKA 352
>AT3G11964.1 | chr3:3793957-3806626 REVERSE LENGTH=1897
Length = 1896
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 143 GASFTGKVRSIKPFGVFVDIG-AFTEGLVHISRVSDGFVKDISSLFTVGQEVSVRLVEAN 201
G +G++R ++PFG+F+DI GL HIS++SD ++++ + + G+ V ++++ +
Sbjct: 1435 GDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKILKLD 1494
Query: 202 KETGRISLTMRT 213
+E RISL M++
Sbjct: 1495 EEKKRISLGMKS 1506
>AT3G03710.1 | chr3:919542-924906 FORWARD LENGTH=923
Length = 922
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 150 VRSIKPFGVFVDIGAFTEGLVHISRVSDGFVKDISSLFTVGQEVSVRLVEANKETGRISL 209
++S+ P+G FV+I EGL HIS +S ++ + VG + V+L+E N E G++ L
Sbjct: 770 IKSMAPYGAFVEIAPGREGLCHISELSAEWLAKPEDAYKVGDRIDVKLIEVN-EKGQLRL 828
Query: 210 TMRTGGDYVKPKTETPK 226
++R + P++ET K
Sbjct: 829 SVRA----LLPESETDK 841
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.309 0.128 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,404,674
Number of extensions: 750065
Number of successful extensions: 3058
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3059
Number of HSP's successfully gapped: 13
Length of query: 1123
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 1014
Effective length of database: 8,118,225
Effective search space: 8231880150
Effective search space used: 8231880150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 117 (49.7 bits)