BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0538300 Os12g0538300|AK067402
(610 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11980.1 | chr5:3868809-3872146 REVERSE LENGTH=570 783 0.0
>AT5G11980.1 | chr5:3868809-3872146 REVERSE LENGTH=570
Length = 569
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/552 (67%), Positives = 449/552 (81%), Gaps = 4/552 (0%)
Query: 31 VLPLAGAAYQPYVSELLSFSIERLHKEPELLRVDAERVRRQMQEVAVENYGAFIAASEAL 90
+L LA A QPYVSELLSF+++RLHKEPELLRVDAER++RQMQEVAV NY AFI A++AL
Sbjct: 17 LLSLASATQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFITAADAL 76
Query: 91 SFVRAQLEGFDRHLEALIEEIPNLTSGCTEFVESAQQILEERKLNQTLLANHSTLLDLLE 150
+R ++ D+HLE+LI E+P LTSGCTEF++SA+ ILE+RK+NQ LLANHSTLLDLLE
Sbjct: 77 LAIRQEVSSIDKHLESLIGEVPKLTSGCTEFIDSAENILEKRKMNQALLANHSTLLDLLE 136
Query: 151 IPQLMDTCIRNGNYDEALDLEAFVSKISKLHPDLPVIQGLAVEVKKTXXXXXXXXXXKLR 210
IPQLMDTC+RNGN+DEALDLEAFVSK++ LHP LPVIQ LA EV++T KLR
Sbjct: 137 IPQLMDTCVRNGNFDEALDLEAFVSKLATLHPKLPVIQALAAEVRQTTQSLLSQLLQKLR 196
Query: 211 SNIQLPECLRIVAHLRRIGVFSESELRLQFLRCREAWLSGILDDLDQRNVYGYLTGMVGY 270
SNIQLPECLRI+ +LRRIGVF E E+RLQFLRCREAWL+GIL+DLDQ+N Y YL GM+
Sbjct: 197 SNIQLPECLRIIGYLRRIGVFGEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINC 256
Query: 271 HRTHLFDVVNQYRAIFNNDKSGSDENYDGGLLFSWAMHQISNHLTTLQVMLPNITEGGSL 330
HR HLFDVVNQYRAIF++D SGS+ENYDGGLLFSWAMHQI++HL TL++MLP ITEGGSL
Sbjct: 257 HRMHLFDVVNQYRAIFSDDTSGSEENYDGGLLFSWAMHQITSHLKTLKIMLPKITEGGSL 316
Query: 331 SNIREQCMYCAMGLGLVGLDFRGLLPPIFEKAVLNLFSKNMGTAVENFQVVLDSHRWVPM 390
SNI +QCMYCAMGLG VGLDFRGLLPP+FE+AVLNLFSKNM TAVENFQ+VLDSHRWVP+
Sbjct: 317 SNILDQCMYCAMGLGGVGLDFRGLLPPLFEEAVLNLFSKNMSTAVENFQLVLDSHRWVPL 376
Query: 391 PSVGFVANGVVDETSDDVTPPSVLMEHPPLAVFVNGVSAAMNELRPCAPLSLKNVLAEEV 450
PSVGF ++G+ +++ DDVTPPS LMEHPPLAVF+NGVS+A+NELRPCAPLSLKNV+A E+
Sbjct: 377 PSVGFPSSGINEDSKDDVTPPSYLMEHPPLAVFINGVSSALNELRPCAPLSLKNVVAHEL 436
Query: 451 VKGLQAVSDSLVRYNAMRMLRGNESSLFLSLCQAFIEVAYPYCSACFGRCYPNGAILITE 510
+KGLQAVSDSL+RYN RMLR +ES+LFLSLC+AF+EV +P+C+ CFGRCYP GA ++ +
Sbjct: 437 IKGLQAVSDSLLRYNTTRMLRLSESNLFLSLCRAFVEVVFPHCATCFGRCYPGGATIVMD 496
Query: 511 RRSTFDAVSQLLTVPAR---SNSSGISIERRQSGSIERKQSGAIERKQSEGIERKQSIDE 567
+S ++ + ++L + SN S I + E + E KQ+E K+ D
Sbjct: 497 AKSAYEGLGRILAASSSQEPSNKSPKVISTDTKDASENGVASQPEEKQAENPNAKEE-DN 555
Query: 568 SAGTTATDNGTP 579
S T TP
Sbjct: 556 SPIPLQTPEITP 567
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,523,499
Number of extensions: 515765
Number of successful extensions: 1767
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1768
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 506
Effective length of database: 8,255,305
Effective search space: 4177184330
Effective search space used: 4177184330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)