BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0514900 Os12g0514900|AK101966
         (235 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26670.1  | chr4:13452257-13453579 FORWARD LENGTH=211          192   2e-49
AT5G55510.1  | chr5:22486525-22487916 REVERSE LENGTH=215          190   4e-49
AT3G10110.1  | chr3:3116225-3117378 FORWARD LENGTH=174             54   6e-08
AT1G18320.1  | chr1:6304472-6305531 FORWARD LENGTH=143             52   4e-07

>AT4G26670.1 | chr4:13452257-13453579 FORWARD LENGTH=211
          Length = 210

 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 124/179 (69%), Gaps = 5/179 (2%)

Query: 57  AVSRNPSPLAAATAAPGVCLLRFAWESAAGSLVGAVVGYGKGLVTTKGFKGSFADAASSA 116
           A   + S       AP VCL RFA ++A G+++G++ GYG GL   KGFKGSFADA  SA
Sbjct: 29  ATDNDSSKALVTIPAPAVCLFRFAGDAAGGAVMGSIFGYGSGLFKKKGFKGSFADAGQSA 88

Query: 117 KIFAVLAGVQSLVACTLRQLRGKDDVLNAGIAGCCTGLALSFPGAPQTMIQSCLTFGTFS 176
           K FAVL+GV SLV C L+Q+RGKDD +N G+AGCCTGLALSFPGAPQ ++QSCLTFG FS
Sbjct: 89  KTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSFPGAPQALLQSCLTFGAFS 148

Query: 177 YIIEMLNKQEPALARPSIT---GTKDLKAGHRVLP-PFTLPLPQEAMEGFSSFQNFLSK 231
           +I+E LNK++ ALA  S++    T   +  HR LP    LP+P+E    FSSF   L+K
Sbjct: 149 FILEGLNKRQTALAH-SVSLRHQTGLFQDHHRALPLSLALPIPEEIKGAFSSFCKSLAK 206



>AT5G55510.1 | chr5:22486525-22487916 REVERSE LENGTH=215
          Length = 214

 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 97/176 (55%), Positives = 123/176 (69%), Gaps = 3/176 (1%)

Query: 58  VSRNPSPLAAATAAPGVCLLRFAWESAAGSLVGAVVGYGKGLVTTKGFKGSFADAASSAK 117
              + S  A    AP VCL+RFA ++A+G+ +G+V GYG GL   KGFKGSF DA  SAK
Sbjct: 30  TDHDSSSKALVIPAPAVCLVRFAGDAASGAFMGSVFGYGSGLFKKKGFKGSFVDAGQSAK 89

Query: 118 IFAVLAGVQSLVACTLRQLRGKDDVLNAGIAGCCTGLALSFPGAPQTMIQSCLTFGTFSY 177
            FAVL+GV SLV C L+Q+RGKDD +N G+AGCCTGLALSFPGAPQ M+QSCLTFG FS+
Sbjct: 90  TFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSFPGAPQAMLQSCLTFGAFSF 149

Query: 178 IIEMLNKQEPALARPSITGTKDLKAGHRVLPPFTL--PLPQEAMEGFSSFQNFLSK 231
           I+E LNK++ ALA  S++  +  ++    LP  +L  P+  E    FSSF N L+K
Sbjct: 150 ILEGLNKRQTALAH-SVSFRQQTRSPQHDLPLLSLAIPIHDEIKGAFSSFCNSLTK 204



>AT3G10110.1 | chr3:3116225-3117378 FORWARD LENGTH=174
          Length = 173

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 37/67 (55%)

Query: 114 SSAKIFAVLAGVQSLVACTLRQLRGKDDVLNAGIAGCCTGLALSFPGAPQTMIQSCLTFG 173
           +S K FAV+  V S   C + + R K D +N  IAGC TG ++S  G P+     C  F 
Sbjct: 100 NSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFA 159

Query: 174 TFSYIIE 180
           TFS +IE
Sbjct: 160 TFSVLIE 166



>AT1G18320.1 | chr1:6304472-6305531 FORWARD LENGTH=143
          Length = 142

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%)

Query: 114 SSAKIFAVLAGVQSLVACTLRQLRGKDDVLNAGIAGCCTGLALSFPGAPQTMIQSCLTFG 173
           +S K FAV+  V S   C + + R K D +N  IAGC TG ++S  G P+     C  F 
Sbjct: 69  NSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFA 128

Query: 174 TFSYIIE 180
            FS +IE
Sbjct: 129 IFSVLIE 135



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,388,775
Number of extensions: 158372
Number of successful extensions: 320
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 4
Length of query: 235
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 140
Effective length of database: 8,502,049
Effective search space: 1190286860
Effective search space used: 1190286860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)