BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0511300 Os12g0511300|AK121419
(343 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24460.1 | chr4:12642888-12645310 FORWARD LENGTH=432 273 1e-73
AT5G12170.2 | chr5:3931649-3934961 FORWARD LENGTH=453 243 1e-64
AT5G19380.2 | chr5:6527017-6530445 REVERSE LENGTH=508 196 2e-50
>AT4G24460.1 | chr4:12642888-12645310 FORWARD LENGTH=432
Length = 431
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/319 (47%), Positives = 193/319 (60%)
Query: 21 NRVLYKLALVPLKQYPFFLAQLTTFGYVAVYFSILYARYRAGVVTGDMLALPKRRXXXXX 80
NRVLYKLALVP+KQYPFF+AQLTTFGYV +YF+ILY R R G+VT +M+ +PK R
Sbjct: 108 NRVLYKLALVPMKQYPFFMAQLTTFGYVLIYFTILYTRRRLGIVTNEMMDVPKWRFAIIG 167
Query: 81 XXXXXXXXXXXXXXXXXXXXXIPILSQSFLVWQLIFSALLLGRTYSMRQIIGCFLVASGV 140
IPIL+Q++LVWQL+F+ L+LGR + + QI GC LVA GV
Sbjct: 168 FLEALGVATGMAAAAMLPGPVIPILNQTYLVWQLLFALLILGRRFLLNQIAGCLLVAVGV 227
Query: 141 ILAVASGANEGQFLSEVKFIWLALMVASSAFQAGASILKESVFIDGAKRLKGRRPDIFVV 200
++AV+SG+ LS + F+W A++VAS+AFQAGASI+KE VF D AKRL+G+ DIFVV
Sbjct: 228 VVAVSSGSGADTTLSGIGFLWPAVLVASAAFQAGASIIKEFVFNDAAKRLEGKSLDIFVV 287
Query: 201 NSFGSGXXXXXXXXXXXXXXXXKGIKFAELPAYLNGGAECFLNVDDSLIDCGGAPFLPLL 260
NSFGSG KGI FA LP+YL GA CF N + C GAP LPLL
Sbjct: 288 NSFGSGFQALFVFLLLPFLSNLKGIPFASLPSYLKDGAGCFFNTGAKISGCDGAPILPLL 347
Query: 261 FILVNMAFNIXXXXXXXXXXXXXXXXXXXXXXPISIYILSLPLPYIPHGAELSSSFXXXX 320
+I N+AFNI P+++YI+S PLPY+P G+ LSS+F
Sbjct: 348 YISTNLAFNISLLHLVKISSAIVSSLTMMLSVPLAVYIMSKPLPYLPGGSSLSSNFTMGC 407
Query: 321 XXXXXXXXXYNLPQSSKKQ 339
YN+P + KQ
Sbjct: 408 IVLVLGLLLYNIPTTPTKQ 426
>AT5G12170.2 | chr5:3931649-3934961 FORWARD LENGTH=453
Length = 452
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/296 (43%), Positives = 169/296 (57%)
Query: 21 NRVLYKLALVPLKQYPFFLAQLTTFGYVAVYFSILYARYRAGVVTGDMLALPKRRXXXXX 80
NRV+YKLALVPLK+YPFFLAQL+TFGYVAVY++ILY RYRAG VT ML++PK
Sbjct: 121 NRVMYKLALVPLKEYPFFLAQLSTFGYVAVYYTILYFRYRAGTVTDAMLSVPKSPFLIVG 180
Query: 81 XXXXXXXXXXXXXXXXXXXXXIPILSQSFLVWQLIFSALLLGRTYSMRQIIGCFLVASGV 140
+LSQ+FLVWQ+ FS + LGR YS+ QI+GC LVA GV
Sbjct: 181 ILEALAAAAGMAAAANLSGPSTTVLSQTFLVWQIFFSIIFLGRRYSVNQILGCTLVALGV 240
Query: 141 ILAVASGANEGQFLSEVKFIWLALMVASSAFQAGASILKESVFIDGAKRLKGRRPDIFVV 200
I++VASG+ L+E +W+ LMV S Q ++LKE +FID +RLKG D+F+V
Sbjct: 241 IVSVASGSGAAHSLNEAGVLWILLMVLSFLLQGAGTVLKEVIFIDSQRRLKGASLDLFIV 300
Query: 201 NSFGSGXXXXXXXXXXXXXXXXKGIKFAELPAYLNGGAECFLNVDDSLIDCGGAPFLPLL 260
NS+GS GI F +L YL GA CFLN C GAPFLPLL
Sbjct: 301 NSYGSAFQAICIALLLPFLSKLWGIPFNQLGTYLKDGAVCFLNNGTITKGCDGAPFLPLL 360
Query: 261 FILVNMAFNIXXXXXXXXXXXXXXXXXXXXXXPISIYILSLPLPYIPHGAELSSSF 316
F+++N+ +NI PI++++ ++PLPY+ + L F
Sbjct: 361 FVIMNIGYNIALLRLLKISSAVVSCLASTVSVPIAVFLFTMPLPYLGVASSLPKGF 416
>AT5G19380.2 | chr5:6527017-6530445 REVERSE LENGTH=508
Length = 507
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/270 (38%), Positives = 144/270 (53%)
Query: 47 YVAVYFSILYARYRAGVVTGDMLALPKRRXXXXXXXXXXXXXXXXXXXXXXXXXXIPILS 106
YVAVYFSILY RYRAG+VT +ML++PK +LS
Sbjct: 205 YVAVYFSILYFRYRAGIVTKEMLSVPKLPFLIVGVLESLALAAGMAAASNLSGPSTTVLS 264
Query: 107 QSFLVWQLIFSALLLGRTYSMRQIIGCFLVASGVILAVASGANEGQFLSEVKFIWLALMV 166
Q+FLVWQ++FS + LGR Y + QI+GC LVA GVI++VASG+ + +W LMV
Sbjct: 265 QTFLVWQILFSIIFLGRRYRINQILGCTLVAFGVIVSVASGSGAAHSFKDTGILWSLLMV 324
Query: 167 ASSAFQAGASILKESVFIDGAKRLKGRRPDIFVVNSFGSGXXXXXXXXXXXXXXXXKGIK 226
S Q +++KE +F+D KRLKG D+FVVNS+GS GI
Sbjct: 325 FSFLLQGADTVMKEVIFLDSKKRLKGASLDLFVVNSYGSIFQVICIALLLPFLSKLWGIP 384
Query: 227 FAELPAYLNGGAECFLNVDDSLIDCGGAPFLPLLFILVNMAFNIXXXXXXXXXXXXXXXX 286
F +LP+Y+ G CFLN+ + C GAP LP++F+++NMA+NI
Sbjct: 385 FNQLPSYIRDGGACFLNIGSRITGCEGAPLLPVMFVMMNMAYNISLLRLIKISSAVVSSL 444
Query: 287 XXXXXXPISIYILSLPLPYIPHGAELSSSF 316
PI++Y +LPLPY+ + L F
Sbjct: 445 ASTVSVPIAVYCFTLPLPYLGVASTLPRGF 474
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 27/27 (100%)
Query: 21 NRVLYKLALVPLKQYPFFLAQLTTFGY 47
NRVLYKLAL+PLKQYPFFLAQL+TFG+
Sbjct: 119 NRVLYKLALIPLKQYPFFLAQLSTFGF 145
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.142 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,831,882
Number of extensions: 142730
Number of successful extensions: 319
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 4
Length of query: 343
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 244
Effective length of database: 8,392,385
Effective search space: 2047741940
Effective search space used: 2047741940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)