BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0506500 Os12g0506500|AK119779
(461 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G39380.1 | chr5:15759163-15760686 REVERSE LENGTH=508 60 2e-09
AT5G07820.1 | chr5:2498861-2500546 REVERSE LENGTH=562 60 2e-09
AT5G15430.1 | chr5:5010180-5011616 FORWARD LENGTH=479 59 5e-09
AT5G61260.1 | chr5:24637109-24638599 FORWARD LENGTH=497 57 3e-08
>AT5G39380.1 | chr5:15759163-15760686 REVERSE LENGTH=508
Length = 507
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 411 LRHQKTLEKKRSRRLYNSVIEETAGKLAIARKSKVKALVGAFESLIS 457
LRHQ EK ++ L+N+VIEETA KL ARKSKVKALVGAFE++IS
Sbjct: 458 LRHQDVQEKD-AQGLFNNVIEETASKLVEARKSKVKALVGAFETVIS 503
>AT5G07820.1 | chr5:2498861-2500546 REVERSE LENGTH=562
Length = 561
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 411 LRHQKTLEKKRSRRLYNSVIEETAGKLAIARKSKVKALVGAFESLIS 457
LRH+K KK+ + L+N+VIEET KL RKSKVKALVGAFE++IS
Sbjct: 489 LRHRKVEVKKKLQTLFNNVIEETVNKLEEVRKSKVKALVGAFETVIS 535
>AT5G15430.1 | chr5:5010180-5011616 FORWARD LENGTH=479
Length = 478
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 38/49 (77%), Gaps = 3/49 (6%)
Query: 411 LRHQKTLEKKRSRR--LYNSVIEETAGKLAIARKSKVKALVGAFESLIS 457
L+HQ T EKKR R L+N VI+ETA KL RKSKVKALVGAFES+IS
Sbjct: 421 LKHQDT-EKKRESRVLLFNKVIKETANKLVQTRKSKVKALVGAFESVIS 468
>AT5G61260.1 | chr5:24637109-24638599 FORWARD LENGTH=497
Length = 496
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 411 LRHQKTLEKKRSRRLYNSVIEETAGKLAIARKSKVKALVGAFESLIS 457
LRH+K KK+ L+N+VIEET KL RK KVKAL+GAFE++IS
Sbjct: 421 LRHRKVEGKKKMITLFNNVIEETVNKLTKVRKHKVKALIGAFETVIS 467
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,686,642
Number of extensions: 155335
Number of successful extensions: 148
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,310,137
Effective search space: 2983339183
Effective search space used: 2983339183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)