BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0472500 Os12g0472500|AK108523
         (226 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32583.1  | chr1:11787351-11788103 FORWARD LENGTH=180          111   3e-25
AT4G24972.1  | chr4:12838220-12839619 FORWARD LENGTH=177          103   9e-23

>AT1G32583.1 | chr1:11787351-11788103 FORWARD LENGTH=180
          Length = 179

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 66/97 (68%), Gaps = 6/97 (6%)

Query: 123 YQGRATPLPSGVPAYTVDVMNRXXXXXXXXXXXXXXXXHVRCGWFSSVSLVDPRVFRRLG 182
           +QG   PLPSGVP+YTV++ N                 HV CGWFSSV LV+PRVFRRL 
Sbjct: 88  FQGSTNPLPSGVPSYTVEIFN------SCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLD 141

Query: 183 HDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219
           +DDCL+NDG+PL  G+++SF+Y NSF Y LSV+  +C
Sbjct: 142 YDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178



>AT4G24972.1 | chr4:12838220-12839619 FORWARD LENGTH=177
          Length = 176

 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 6/96 (6%)

Query: 124 QGRATPLPSGVPAYTVDVMNRXXXXXXXXXXXXXXXXHVRCGWFSSVSLVDPRVFRRLGH 183
           Q    P+P+G+P Y V++ N+                H+ CGWFSS  L++PRVF+R+ +
Sbjct: 86  QAVTEPMPNGIPGYMVEITNQCMSGCIISRI------HINCGWFSSAKLINPRVFKRIHY 139

Query: 184 DDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219
           DDCL+N+G+PL  G T+SF Y N+FPY LSV+  TC
Sbjct: 140 DDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,468,056
Number of extensions: 64309
Number of successful extensions: 102
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 131
Effective length of database: 8,502,049
Effective search space: 1113768419
Effective search space used: 1113768419
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)