BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0431300 Os12g0431300|AK110931
(777 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21680.1 | chr1:7613028-7615148 FORWARD LENGTH=707 316 4e-86
AT1G21670.1 | chr1:7610409-7612520 FORWARD LENGTH=704 255 5e-68
AT4G01870.1 | chr4:808473-810431 REVERSE LENGTH=653 230 2e-60
>AT1G21680.1 | chr1:7613028-7615148 FORWARD LENGTH=707
Length = 706
Score = 316 bits (809), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 255/738 (34%), Positives = 349/738 (47%), Gaps = 125/738 (16%)
Query: 7 SIAFFGTYRPPVPLDIFSCPANPPPQSAKDELLLTDGESYNQNGQ-PIPAAALKELLTFL 65
+I F R DIF+ PP S EL +TDGES N NG P P+ AL LL
Sbjct: 33 TIIFTTLGRSHYEFDIFALSTTQPP-SVSGELRITDGESVNFNGYFPSPSPALLSLL--- 88
Query: 66 GKKNPKLASECGATPEDAEKGRVTGLVFVSERDRGLETLHVALRFVAGGKQVKVLSLGNI 125
E ED+ L++V+ER+ G +L+ L V GG ++
Sbjct: 89 -------PDETLIQMEDSSP---LHLIYVTERN-GTSSLYYDL--VYGGNSDFKTKRRSV 135
Query: 126 YGADTFGGVRMED-----SGCVAGGFKVGRTTVGHSLVYVSTKAPVKARRTPWTVVYRTD 180
A + V + SG FK + G +VYVST R WT VY T+
Sbjct: 136 LEAPSRVQVPLLSRFDHLSGMTVNSFKDKPSLSGEFIVYVSTHESSGEPRASWTAVYSTE 195
Query: 181 LADGKTERLTPLGQYDLSPAVSPSGKMVAVANFQQNRWNGEIENLKTDIVVMNVDKRAQG 240
L G T RLTP G D SPAVSPSG + AVA++ + W GE+E L+TDI V +
Sbjct: 196 LKTGLTRRLTPSGVADFSPAVSPSGNLTAVASYGERGWTGEVEELRTDIYVF----LTRD 251
Query: 241 RSDRKVLIKDGGWPTWGSDNVIFFHRGFDTTPPSNTARW-GVFR--------FDIAAGKE 291
S R +++ GGWP W ++ ++FHR S W V+R +
Sbjct: 252 GSHRVKVVEHGGWPCWVDESTLYFHRR------SEEDGWISVYRAILPENGPLTTESVTI 305
Query: 292 ERVTDESIDAMTPAAISETQ--VAVATVREKSKQVLMKVERVVTQYRHIEIFDTASKTSV 349
+RVT + A TPA VAVAT R S YRH+E+FD +
Sbjct: 306 QRVTPPGVHAFTPATSPNNHEFVAVATRRPGS------------DYRHVELFDLKRNEFI 353
Query: 350 PITQKTRPEGDHYNPFVLDGGTRVGYHRCRTDKLLKVQNQKSTPTTSIQRRFDKVQPPES 409
+T+ P+ H NPF+ +RVGYH CR D N + +P ++ +Q +
Sbjct: 354 ELTRLVAPKSHHLNPFLSPDSSRVGYHSCRGDA-----NGRRSPLLFLE----NIQ--TT 402
Query: 410 HADVGLFRVTGVFPSVSKNGKKLAFVDNEFKAVWLADGRGLRVVYKVRATKSVFSTSWNQ 469
D+ LFR+ G FPS S G ++A+V V DG G R VYK A FST+W+
Sbjct: 403 TRDLSLFRIDGSFPSFSPGGDRIAYVKMPGVFVVKPDGSGQREVYKGMA----FSTAWDP 458
Query: 470 NDDLDTLYVCEGPAFSIDK-PVQIMRIPNVSREDYENMETFPLTDEEYNCAFPSTNAEGT 528
+Y GP F+ ++ V ++ I +V D ++ LT N AFP + +G
Sbjct: 459 VRP-GIVYSSSGPTFATERTEVDVISI-DVDAAD-KSSSVRRLTTNGKNNAFPWPSPDGK 515
Query: 529 KLVFRSSRNRVAGGERQHKNLYIIDAEKGEAAGVVPLTDGPWTDTHCSWSPREGCDWIVF 588
++VFRS R HKNLYI+DAEKGE+ G+ LT+G WTDT C+WSP +WI F
Sbjct: 516 RIVFRSGRT-------GHKNLYIMDAEKGESGGLWRLTEGAWTDTMCNWSP--DGEWIAF 566
Query: 589 SSTGRPEKDIVKGKDEPEKDHGLDPGYFAVYLV--NAKDIKKGEVPVPVRVIHSAPTIAG 646
+S ++ P G F ++L+ N ++K +I S G
Sbjct: 567 ASD----------RESPGS------GSFELFLIHPNGTGLRK--------LIQSG--TGG 600
Query: 647 HINHPVFSPDMKSIVFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTDMAKNRDI 706
NHP+FSPD KS+VF +D A +SA+PIS P H +PYGDIF+V L D
Sbjct: 601 RTNHPIFSPDSKSLVFTSDYAGISAEPISNP---HHYQPYGDIFTVKL----------DG 647
Query: 707 QEFHRITHSRYEYSTPTW 724
R+TH+ YE TP W
Sbjct: 648 SNVRRLTHNSYEDGTPAW 665
>AT1G21670.1 | chr1:7610409-7612520 FORWARD LENGTH=704
Length = 703
Score = 255 bits (652), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 234/745 (31%), Positives = 329/745 (44%), Gaps = 145/745 (19%)
Query: 4 SRGSIAFFGTY-RPPVPLDIFSCPANPPPQSAKDELLLTDGESYNQNGQ-PIPAAALKEL 61
S GS F T RP DIF+ P + P S DE LTDG+S N NG P+ AL L
Sbjct: 29 SNGSTILFTTIGRPTFEFDIFTLPTSHRPPSPADEHRLTDGKSINFNGYFASPSTALISL 88
Query: 62 LTFLGKKNPKLASECGATPEDAEKGRVTGLVFVSERDRGLETLH---VALRFVAGGKQVK 118
L PK P+D L++V+ER G +L+ V V QV
Sbjct: 89 L-------PK---RTQIQPQDVH------LIYVTER-AGTPSLNYDVVHSDNVGSRIQVP 131
Query: 119 VLSLGNIYGADTFGGVR---MEDSGCVAGGFKVGRTTVGHSLVYVSTKAPVKARRTPWTV 175
+ S G + G+ M+D+ + G+ LV+VST W
Sbjct: 132 LFS-----GEEQQSGMNVNSMKDTPVLTNGY----------LVHVSTHENPGKPMASWAA 176
Query: 176 VYRTDLADGKTERLTPLGQYDLSPAVSPSGKMVAVANFQQNRWNGEI--ENLKTDIVVMN 233
VY T+L T RLTPLG D SPAVSPSGK AVA+F + W + + + +D+ V
Sbjct: 177 VYSTELRTKSTRRLTPLGIADFSPAVSPSGKWTAVASFGEKGWTWSMVEKEISSDVYVF- 235
Query: 234 VDKRAQGRSDRKVLIKDGGWPTWGSDNVIFFHRGFDTTPPSNTARWGVFR--------FD 285
Q + R +++ GGWP W D+ ++FHR S+ V+R
Sbjct: 236 ---LTQDGTQRVKVVEQGGWPRWVDDSTLYFHRK------SDDGWISVYRAILPKTGPVT 286
Query: 286 IAAGKEERVTDESIDAMTPAAISETQ--VAVATVREKSKQVLMKVERVVTQYRHIEIFDT 343
+ +RVT + A TPA +AVAT R S + RH+E+FD
Sbjct: 287 TKSVTIQRVTPPGLHAFTPATSPNNNNFIAVATRRPGS------------EIRHVELFDL 334
Query: 344 ASKTSVPITQKTRPEGDHYNPFVLDGGTRVGYHRCRTDKLLKVQNQKSTPTTSIQRRFDK 403
V +T+ P+ H+NPF+ +RVGYH CR D + TP +Q
Sbjct: 335 KKNEFVELTRLVSPKSHHFNPFLSPDSSRVGYHSCRGDA-----TGRKTPRNLLQSL--- 386
Query: 404 VQPPESHADVGLFRVTGVFPSVSKNGKKLAFVDNEFKAVWLA--DGRGLRVVYKVRATKS 461
+ D+ LFR G FPS+S G + AFV F V++ DG GLR +
Sbjct: 387 ---KTTSNDLSLFRFDGAFPSISPEGDRFAFV--SFTGVFVVNPDGSGLRQLLPQMG--- 438
Query: 462 VFSTSWNQNDDLDTLYVCEGPAFSIDKP-VQIMRIPNVSREDYENMETFPLTDEEYNCAF 520
F T W+ +Y GPA + K + I+ I + ++ T E N AF
Sbjct: 439 -FGTVWDPIRH-GIVYTSSGPALAPGKSQIDILAINVDAPSPATAVKKLTTTGE--NNAF 494
Query: 521 PSTNAEGTKLVFRSSRNRVAGGERQHKNLYIIDAEKGEAAGVVPLTDGPWTDTHCSWSPR 580
P + +G ++VFRS+R+ KNLYI+DAEKGE+ G+ LT+G W DT +WSP
Sbjct: 495 PWPSPDGKRIVFRSARSGT-------KNLYIMDAEKGESGGLFRLTNGNWNDTIATWSP- 546
Query: 581 EGCDWIVFSSTGRPEKDIVKGKDEPEKDHGLDPGYFAVYLVNAKDIKKGEVPVPVRVIHS 640
+WIVF+S ++ +Y+V+ ++
Sbjct: 547 -DGNWIVFASNREFPGTLL----------------MNIYVVHPDGTGLRKL--------- 580
Query: 641 APTIAGHIN-HPVFSPDMKSIVFAADLAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTD 699
A + G ++ HP+FSPD K IVF A +SA+ I PHF P +IF+VNL
Sbjct: 581 AQNLTGLVSMHPMFSPDSKRIVFTTIYAGISAEQIGNPHFN---VPSSEIFTVNL----- 632
Query: 700 MAKNRDIQEFHRITHSRYEYSTPTW 724
D R+TH+ E P W
Sbjct: 633 -----DGSGLTRLTHNSVEDGPPMW 652
>AT4G01870.1 | chr4:808473-810431 REVERSE LENGTH=653
Length = 652
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 193/599 (32%), Positives = 269/599 (44%), Gaps = 102/599 (17%)
Query: 152 TVGHSLVYVSTKAPVKARRTPWTVVYRTDLADGKTE--RLTPLGQYDLSPAVSPSGKMVA 209
T + L ++S W+ +Y +L K E R+TP D SPAVS SG +A
Sbjct: 95 TQNNRLYFISAHEQPDRYFKNWSALYTVELNSAKREVTRVTPPDTADFSPAVSQSGDFLA 154
Query: 210 VANFQQNRWNGEIENLKTDIVVMNVDKRAQGRSDRKVLIKDGGWPTWGSDNVIFFHRGFD 269
VA++ W GE + TDI V +A R V+ + GGWPTW D+ +FFH D
Sbjct: 155 VASYGTRSWGGEFHEINTDITVF----KASKPETRVVICERGGWPTWSGDSTVFFHHQAD 210
Query: 270 TTPPSNTARWGVFRFDIAAGKEE---------RVTDESIDAMTPAAISETQVAVATVREK 320
W +FR DI E RVT + TPAA +
Sbjct: 211 D------GWWSIFRVDIPENFTEYTDFPITPIRVTPSGLHCFTPAAFRD----------- 253
Query: 321 SKQVLMKVERVVTQYRHIEIFDTASKTSVPITQKTRPEGDHYNPFVLDGGTRVGYHRCRT 380
K++ + R +RHIEI+D + T P+T+ P HYNPFV +GYHR R
Sbjct: 254 GKRIALATRRRGVNHRHIEIYDLENTTFQPVTESLNPSFHHYNPFVSPDSEFLGYHRFRG 313
Query: 381 DKLLKVQNQKSTPTTSIQRRFDKVQPPESHADVGLFRVTGVFPSVSKNGKKLA----FVD 436
+ ST SI + + P + L R+ G FPS S NG +A F
Sbjct: 314 E---------STQGESIVPNIESIVSPIK--TLRLLRINGSFPSSSPNGDLIALNSDFDI 362
Query: 437 NEFKAVWLADGRGLRVVYKVRATKSVFSTSWNQNDDLDTLYVCEGPAFSIDK-PVQIMRI 495
N V +DG + K R + F SW+ + +Y GP FS + VQI RI
Sbjct: 363 NGGIKVSKSDGSKRWTLIKDR---TAFYNSWSPT-ERHVIYTSLGPIFSPARIAVQIARI 418
Query: 496 PNVSREDYENMETFP-----LTDEEY-NCAFPSTNAEGTKLVFRSSRNRVAGGERQHKNL 549
+ + E P LT E N AFPS + +G +VFRS R+ HKNL
Sbjct: 419 KFDPSDLTADKEDLPCDVKILTLENTGNNAFPSCSPDGKSIVFRSGRS-------GHKNL 471
Query: 550 YIIDAEKGEA--AGVVPLTDGPWTDTHCSWSPREGCDWIVFSSTGRPEKDIVKGKDEPEK 607
YI+DA GE+ G+ LTDGPW DT WSP+ D I FSS + PE
Sbjct: 472 YIVDAVNGESNGGGIRRLTDGPWIDTMPCWSPK--GDLIGFSSN----------RHNPE- 518
Query: 608 DHGLDPGYFAVYLV--NAKDIKKGEVPVPVRVIHSAPTIAGHINHPVFSPDMKSIVFAAD 665
+ F Y+V + +++ ++ P +A +NH F+ D +VFAA+
Sbjct: 519 ----NTAVFGAYVVRPDGTGLRRIQISGPEGSEEAA---RERVNHVSFNKDGDWLVFAAN 571
Query: 666 LAAVSADPISMPHFTHSVRPYGDIFSVNLRDTTDMAKNRDIQEFHRITHSRYEYSTPTW 724
L+ V+A+P++MP + +PYGD++ V L D R+T + YE TPTW
Sbjct: 572 LSGVTAEPVTMP---NQFQPYGDLYVVKL----------DGTGLRRLTWNGYEDGTPTW 617
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,386,453
Number of extensions: 843977
Number of successful extensions: 1882
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1854
Number of HSP's successfully gapped: 4
Length of query: 777
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 671
Effective length of database: 8,200,473
Effective search space: 5502517383
Effective search space used: 5502517383
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)