BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0420300 Os12g0420300|AK071692
         (93 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02800.1  | chr3:606638-607704 REVERSE LENGTH=204              126   2e-30
AT5G16480.1  | chr5:5381334-5382618 REVERSE LENGTH=205            121   8e-29
AT1G05000.2  | chr1:1425660-1428393 FORWARD LENGTH=248            107   9e-25
AT2G32960.1  | chr2:13987976-13990720 FORWARD LENGTH=258          105   3e-24
AT4G03960.1  | chr4:1887673-1889000 FORWARD LENGTH=199            105   7e-24

>AT3G02800.1 | chr3:606638-607704 REVERSE LENGTH=204
          Length = 203

 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 68/89 (76%)

Query: 4   DVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIESFD 63
           DVRNHP+LIHCKRGKHRTGCLVGC RK+Q+WCLSSV EEY + A  K R  DL FIE+FD
Sbjct: 102 DVRNHPILIHCKRGKHRTGCLVGCLRKVQSWCLSSVLEEYQKNAGLKWRQRDLNFIEAFD 161

Query: 64  VNCMTDCLLRLIYHYHGCLQKSKRLAYSE 92
           +  +  CLL ++Y YHG   K +RLAY E
Sbjct: 162 IVSLRQCLLSIMYQYHGYGFKRRRLAYEE 190



>AT5G16480.1 | chr5:5381334-5382618 REVERSE LENGTH=205
          Length = 204

 Score =  121 bits (303), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 66/89 (74%)

Query: 4   DVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIESFD 63
           DVRNHP+LIHCKRGKHRTGCLVGC RK+QNWCLSSV EEY + A  K R  DL+FIE FD
Sbjct: 101 DVRNHPILIHCKRGKHRTGCLVGCLRKVQNWCLSSVLEEYQKCAGLKWRQRDLRFIEDFD 160

Query: 64  VNCMTDCLLRLIYHYHGCLQKSKRLAYSE 92
           V  +  CL  +IY Y+G   K ++L Y E
Sbjct: 161 VLRLKQCLYSIIYQYNGYGLKRRKLLYQE 189



>AT1G05000.2 | chr1:1425660-1428393 FORWARD LENGTH=248
          Length = 247

 Score =  107 bits (268), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 56/65 (86%)

Query: 4   DVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIESFD 63
           D +NHPVLIHCKRGKHRTGCLVGC RKLQ WCL+S+F+EY R+AA K+R+SD +F+E FD
Sbjct: 172 DEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAAKARVSDQRFMEIFD 231

Query: 64  VNCMT 68
           V+  +
Sbjct: 232 VSSFS 236



>AT2G32960.1 | chr2:13987976-13990720 FORWARD LENGTH=258
          Length = 257

 Score =  105 bits (263), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 56/64 (87%)

Query: 4   DVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIESFD 63
           D +NHP+LIHCKRGKHRTGCLVGC RKLQ WC++S+ +EY R+AA K+R+SD +F+ESFD
Sbjct: 182 DEKNHPLLIHCKRGKHRTGCLVGCMRKLQKWCITSILDEYKRFAAAKARVSDQRFLESFD 241

Query: 64  VNCM 67
           V+ +
Sbjct: 242 VSGL 245



>AT4G03960.1 | chr4:1887673-1889000 FORWARD LENGTH=199
          Length = 198

 Score =  105 bits (261), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 53/62 (85%)

Query: 4   DVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIESFD 63
           D  NHPVLIHCK GKHRTGCLVGC RK+Q WCLSS+F+EY R+AA K+R+SD +F+E FD
Sbjct: 116 DTENHPVLIHCKSGKHRTGCLVGCVRKIQRWCLSSIFDEYQRFAAAKARISDQRFMELFD 175

Query: 64  VN 65
           ++
Sbjct: 176 IS 177



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.141    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,167,883
Number of extensions: 77428
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 5
Length of query: 93
Length of database: 11,106,569
Length adjustment: 64
Effective length of query: 29
Effective length of database: 9,351,945
Effective search space: 271206405
Effective search space used: 271206405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)