BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0403800 Os12g0403800|AK064189
(284 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07750.1 | chr3:2473486-2475218 FORWARD LENGTH=287 447 e-126
AT3G12990.1 | chr3:4156345-4157842 FORWARD LENGTH=308 106 2e-23
AT3G60500.1 | chr3:22354245-22356440 FORWARD LENGTH=439 101 5e-22
AT1G60080.1 | chr1:22152605-22154339 REVERSE LENGTH=303 90 1e-18
>AT3G07750.1 | chr3:2473486-2475218 FORWARD LENGTH=287
Length = 286
Score = 447 bits (1149), Expect = e-126, Method: Compositional matrix adjust.
Identities = 215/283 (75%), Positives = 247/283 (87%)
Query: 2 VGLSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVK 61
+GLS GE+HFI+GGIAQDLRTDGR+RL +R I VETGVIPQANGSARVR+G T+VIA+VK
Sbjct: 1 MGLSLGEQHFIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVK 60
Query: 62 AELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGAA 121
AE+G+PS L PDKGKV++F+DCSPTA P F GRG EE S+EL +ALQRCLLGGKSGAGA
Sbjct: 61 AEIGRPSSLQPDKGKVAVFIDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAG 120
Query: 122 IDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTDE 181
I+LSSL++ +GKVCWDLYIDGLV+SSDGNLLDAL AAIK AL++T IPKVNVS DE
Sbjct: 121 INLSSLLIKEGKVCWDLYIDGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDE 180
Query: 182 EPEVNVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQIRG 241
+PE+++SDEE+LQFDTSSVPVIVTLTKVG HYIVDAT+EEESQMSSAVS+SVNR G I G
Sbjct: 181 QPEIDISDEEYLQFDTSSVPVIVTLTKVGTHYIVDATAEEESQMSSAVSISVNRTGHICG 240
Query: 242 LTKRGGAGLDPSVIFDMISVAKHVSRQFISVLDSETLAAEAAE 284
LTKR G+GLDPSVI DMISVAKHV+ +S LDSE AAEA E
Sbjct: 241 LTKRSGSGLDPSVILDMISVAKHVTETLMSKLDSEISAAEACE 283
>AT3G12990.1 | chr3:4156345-4157842 FORWARD LENGTH=308
Length = 307
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/267 (31%), Positives = 129/267 (48%), Gaps = 17/267 (6%)
Query: 1 MVGLSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATV 60
M L+ E F+ + +LR DGR +R ++++ G + GS++V+LG T V+A V
Sbjct: 8 MWRLTVNESKFVESALQSELRVDGRGLYDYRKLTIKFG---KEYGSSQVQLGQTHVMAFV 64
Query: 61 KAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGA 120
A+L +P P +G SIF + SP A P FE E + EL + R L +
Sbjct: 65 TAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESR----- 119
Query: 121 AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTD 180
A+D SL V+ GK+ W + ID ++ + GNL+DA A AL P V + D
Sbjct: 120 AVDTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQD 179
Query: 181 ---EEPEVNVSDEEFLQFDTSSVPVIVTLTKVGKHYI--VDATSEEESQMSSAVSVSVNR 235
PE + E L +P+ T K I +D T EE+ M ++V+VN
Sbjct: 180 VIIHPPE----EREPLPLIIHHLPIAFTFGFFNKGSILVMDPTYVEEAVMCGRMTVTVNA 235
Query: 236 HGQIRGLTKRGGAGLDPSVIFDMISVA 262
+G I + K G G++ SVI + +A
Sbjct: 236 NGDICAIQKPGEEGVNQSVILHCLRLA 262
>AT3G60500.1 | chr3:22354245-22356440 FORWARD LENGTH=439
Length = 438
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 132/265 (49%), Gaps = 13/265 (4%)
Query: 1 MVGLSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATV 60
M L+ E F+ + +LR DGR +R ++++ G + GS+ V+LG T V+ V
Sbjct: 8 MWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFV 64
Query: 61 KAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGA 120
A+L +P P++G +SIF + SP A P FE E + EL + R L +
Sbjct: 65 TAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESR----- 119
Query: 121 AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTD 180
A+D SL V+ GK+ W + ID ++ + GNL+DA A AL P + ++
Sbjct: 120 AVDTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRP--DCTVGGENG 177
Query: 181 EEPEVN-VSDEEFLQFDTSSVPVIVTLTKVGKHYIV--DATSEEESQMSSAVSVSVNRHG 237
+E ++ + + E L +P+ T K IV D T EE+ M ++V+VN +G
Sbjct: 178 QEVIIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANG 237
Query: 238 QIRGLTKRGGAGLDPSVIFDMISVA 262
I + K G G++ SVI + +A
Sbjct: 238 DICAIQKPGEEGVNQSVILHCLRLA 262
>AT1G60080.1 | chr1:22152605-22154339 REVERSE LENGTH=303
Length = 302
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 133/280 (47%), Gaps = 25/280 (8%)
Query: 10 HFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATVKAELGKPSI 69
F +++ LR DGR+ + R V G++ A+GSA ++G+T ++A ++ E+ PS
Sbjct: 26 RFFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAIRMEVMTPST 85
Query: 70 LHPDKGKVSIFVD----CSPTAAPMFEGRGSEEFSAELCVALQRCLLGGKSGAGAAIDLS 125
PD+G ++I CSPT P GR +E V +R L + IDL
Sbjct: 86 DSPDEGCIAIEFHMPPICSPTVRP---GRPAEAAP----VISKR--LSDTILSSGMIDLK 136
Query: 126 SLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKV----NVSLSATTDE 181
L +V GK W Y+D + +DG L DA A A S+ IP V N + A T E
Sbjct: 137 ELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGE 196
Query: 182 EPEVN-------VSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVN 234
+ + N ++E + ++P +T + + D T+EEES M + V+V ++
Sbjct: 197 KDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLD 256
Query: 235 RHGQIRGLTKRGGAGLD-PSVIFDMISVAKHVSRQFISVL 273
Q+ K GGA L S I + +A+ +++ +L
Sbjct: 257 SSDQMVSFYKSGGAALAYSSAIKSCVELARKRAKELKQIL 296
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,664,855
Number of extensions: 230217
Number of successful extensions: 601
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 6
Length of query: 284
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 187
Effective length of database: 8,447,217
Effective search space: 1579629579
Effective search space used: 1579629579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)