BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0291400 Os12g0291400|AK099574
(175 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67090.1 | chr1:25048465-25049249 REVERSE LENGTH=181 241 2e-64
AT5G38410.3 | chr5:15377501-15378306 REVERSE LENGTH=187 239 5e-64
AT5G38430.1 | chr5:15384350-15385155 REVERSE LENGTH=182 239 6e-64
AT5G38420.1 | chr5:15381203-15381978 REVERSE LENGTH=182 238 1e-63
>AT1G67090.1 | chr1:25048465-25049249 REVERSE LENGTH=181
Length = 180
Score = 241 bits (614), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 112/167 (67%), Positives = 136/167 (81%), Gaps = 3/167 (1%)
Query: 4 TVMAS--SATSVAPFQGLKSTAGLPVSRRSNSAGLGSVSNGGRISCMQVWPIEGIKKFET 61
T++AS AT VAPF GLKS+A P +R++N+ SNGGR++CMQVWP G KKFET
Sbjct: 10 TMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFET 69
Query: 62 LSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPM 120
LSYLP LT +L K+++YL+R+KW+PC+EF + GFVYRE+ SPGYYDGRYWTMWKLP+
Sbjct: 70 LSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPL 129
Query: 121 FGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPP 167
FGCTD+ QVLKE+EE KK YP+AF+RIIGFDN RQVQ ISFIAYKPP
Sbjct: 130 FGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176
>AT5G38410.3 | chr5:15377501-15378306 REVERSE LENGTH=187
Length = 186
Score = 239 bits (610), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 111/171 (64%), Positives = 134/171 (78%), Gaps = 6/171 (3%)
Query: 8 SSATSVAPFQGLKSTAGLPVSRRSNSAGLGSVSNGGRISCMQVWPIEGIKKFETLSYLPP 67
+ AT VAPF GLKS+A PV+R++N SNGGR+SCM+VWP G KKFETLSYLP
Sbjct: 16 AQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPD 75
Query: 68 LTVEDLLKQIEYLLRSKWVPCLEF------SKVGFVYRENHRSPGYYDGRYWTMWKLPMF 121
L+ +L K+++YLLR+KW+PC+EF +K GFVYRE+ +PGYYDGRYWTMWKLP+F
Sbjct: 76 LSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNTPGYYDGRYWTMWKLPLF 135
Query: 122 GCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGCEES 172
GCTD+ QVLKE+EE KK YP AF+RIIGFDN RQVQ ISFIAYKPP E+
Sbjct: 136 GCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTEA 186
>AT5G38430.1 | chr5:15384350-15385155 REVERSE LENGTH=182
Length = 181
Score = 239 bits (609), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 110/161 (68%), Positives = 132/161 (81%), Gaps = 1/161 (0%)
Query: 8 SSATSVAPFQGLKSTAGLPVSRRSNSAGLGSVSNGGRISCMQVWPIEGIKKFETLSYLPP 67
+ AT VAPF GLKS+A PV+R++N+ SNGGR+SCM+VWP G KKFETLSYLP
Sbjct: 16 AQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPD 75
Query: 68 LTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDA 126
LT +L K+++YLLR+KW+PC+EF + GFVYRE+ +PGYYDGRYWTMWKLP+FGCTD+
Sbjct: 76 LTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDS 135
Query: 127 TQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPP 167
QVLKE+EE KK YP AF+RIIGFDN RQVQ ISFIAYKPP
Sbjct: 136 AQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176
>AT5G38420.1 | chr5:15381203-15381978 REVERSE LENGTH=182
Length = 181
Score = 238 bits (608), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 134/166 (80%), Gaps = 1/166 (0%)
Query: 8 SSATSVAPFQGLKSTAGLPVSRRSNSAGLGSVSNGGRISCMQVWPIEGIKKFETLSYLPP 67
+ AT VAPF GLKS+A PV+R++N+ SNGGR+SCM+VWP G KKFETLSYLP
Sbjct: 16 AQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPD 75
Query: 68 LTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDA 126
L+ +L K+++YLLR+KW+PC+EF + GFVYRE+ +PGYYDGRYWTMWKLP+FGCTD+
Sbjct: 76 LSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDS 135
Query: 127 TQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPGCEES 172
QVLKE+EE KK YP AF+RIIGFDN RQVQ ISFIAYKPP E+
Sbjct: 136 AQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFTEA 181
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,120,361
Number of extensions: 166932
Number of successful extensions: 359
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 4
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)