BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0291200 Os12g0291200|Os12g0291200
(123 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67090.1 | chr1:25048465-25049249 REVERSE LENGTH=181 160 2e-40
AT5G38420.1 | chr5:15381203-15381978 REVERSE LENGTH=182 157 1e-39
AT5G38430.1 | chr5:15384350-15385155 REVERSE LENGTH=182 157 1e-39
AT5G38410.3 | chr5:15377501-15378306 REVERSE LENGTH=187 153 2e-38
>AT1G67090.1 | chr1:25048465-25049249 REVERSE LENGTH=181
Length = 180
Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 94/155 (60%), Gaps = 41/155 (26%)
Query: 10 ATSVAPFQGLKSTAGLPVSRRSTNSGFGDITNGGRIKCMQVWPVDGKKKFETLS------ 63
AT VAPF GLKS+A P +R++ N +NGGR+ CMQVWP GKKKFETLS
Sbjct: 18 ATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLT 77
Query: 64 -----------------------------------SPGYYDGRYWTIWKLPMFGCSDNSQ 88
SPGYYDGRYWT+WKLP+FGC+D++Q
Sbjct: 78 DSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQ 137
Query: 89 VIKELEEAKKAYPDAFIHIVGFDNVRHVQCISFIA 123
V+KE+EE KK YP+AFI I+GFDN R VQCISFIA
Sbjct: 138 VLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIA 172
>AT5G38420.1 | chr5:15381203-15381978 REVERSE LENGTH=182
Length = 181
Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 94/155 (60%), Gaps = 41/155 (26%)
Query: 10 ATSVAPFQGLKSTAGLPVSRRSTNSGFGDITNGGRIKCMQVWPVDGKKKFETLS------ 63
AT VAPF GLKS+A PV+R++ N +NGGR+ CM+VWP GKKKFETLS
Sbjct: 18 ATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLS 77
Query: 64 -----------------------------------SPGYYDGRYWTIWKLPMFGCSDNSQ 88
+PGYYDGRYWT+WKLP+FGC+D++Q
Sbjct: 78 DVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQ 137
Query: 89 VIKELEEAKKAYPDAFIHIVGFDNVRHVQCISFIA 123
V+KE+EE KK YP AFI I+GFDN R VQCISFIA
Sbjct: 138 VLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 172
>AT5G38430.1 | chr5:15384350-15385155 REVERSE LENGTH=182
Length = 181
Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 94/155 (60%), Gaps = 41/155 (26%)
Query: 10 ATSVAPFQGLKSTAGLPVSRRSTNSGFGDITNGGRIKCMQVWPVDGKKKFETLS------ 63
AT VAPF GLKS+A PV+R++ N +NGGR+ CM+VWP GKKKFETLS
Sbjct: 18 ATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLT 77
Query: 64 -----------------------------------SPGYYDGRYWTIWKLPMFGCSDNSQ 88
+PGYYDGRYWT+WKLP+FGC+D++Q
Sbjct: 78 DVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQ 137
Query: 89 VIKELEEAKKAYPDAFIHIVGFDNVRHVQCISFIA 123
V+KE+EE KK YP AFI I+GFDN R VQCISFIA
Sbjct: 138 VLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 172
>AT5G38410.3 | chr5:15377501-15378306 REVERSE LENGTH=187
Length = 186
Score = 153 bits (387), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 93/160 (58%), Gaps = 46/160 (28%)
Query: 10 ATSVAPFQGLKSTAGLPVSRRSTNSGFGDITNGGRIKCMQVWPVDGKKKFETLS------ 63
AT VAPF GLKS+A PV+R++ +NGGR+ CM+VWP GKKKFETLS
Sbjct: 18 ATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLS 77
Query: 64 ----------------------------------------SPGYYDGRYWTIWKLPMFGC 83
+PGYYDGRYWT+WKLP+FGC
Sbjct: 78 DVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNTPGYYDGRYWTMWKLPLFGC 137
Query: 84 SDNSQVIKELEEAKKAYPDAFIHIVGFDNVRHVQCISFIA 123
+D++QV+KE+EE KK YP AFI I+GFDN R VQCISFIA
Sbjct: 138 TDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIA 177
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,972,557
Number of extensions: 125208
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 8
Length of query: 123
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 37
Effective length of database: 8,748,793
Effective search space: 323705341
Effective search space used: 323705341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)