BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0290600 Os12g0290600|AK073696
         (285 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27460.1  | chr3:10159537-10161994 REVERSE LENGTH=271          313   5e-86
AT5G40550.1  | chr5:16241285-16243100 FORWARD LENGTH=274          283   1e-76

>AT3G27460.1 | chr3:10159537-10161994 REVERSE LENGTH=271
          Length = 270

 Score =  313 bits (803), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 165/266 (62%), Positives = 199/266 (74%), Gaps = 4/266 (1%)

Query: 23  DIASLLDKAKELDQLRKEQDEVVTEINKMHKKILSSPEMVDKQVDATLIRLRALYTRAKE 82
           DIA +LD  KELD+LRKEQ+EV+ EINKMHKK+ ++PE+V+K  D +L +L+ LY +AKE
Sbjct: 6   DIAGILDNTKELDRLRKEQEEVLVEINKMHKKLQATPEIVEKPGDISLSKLKNLYIQAKE 65

Query: 83  LCESEVSASSALVGLLDGLLQSGTSAAQRKKIEVGEQKKKRMKSDTDTTRFSSASMRSQL 142
           L ESEV+ S+ L+  LD LL SG +  QR+K+E  EQK+KRMK DTD TR S  SMR+Q+
Sbjct: 66  LSESEVTVSNILLTQLDSLLPSGPTGQQRRKLEGNEQKRKRMKVDTDVTRVS-PSMRNQI 124

Query: 143 DQATNLKGEQVAAKVKS-DEEKDEWFVVKVIHFDKETKEYEVLDEEPGDDEE-SAQKKYK 200
           +   +LKGEQVAA+V + D EKDEWFVVKVIHFD+ETKE EVLDEEPGDDEE   Q+ YK
Sbjct: 125 EAYASLKGEQVAARVTAEDAEKDEWFVVKVIHFDRETKEVEVLDEEPGDDEEGGGQRTYK 184

Query: 201 LPMSDIIPFPKRGDPSSAPDFGQGRQVLAVYPSTTALYRATVASN-RKRKSXXXXXXXXX 259
           L MS I+PFPKR DPSS  +F  G+ VLAVYP TTALY+ATV S  RKRKS         
Sbjct: 185 LSMSCILPFPKRNDPSSTQEFIPGKHVLAVYPGTTALYKATVISTPRKRKSDEYLLEFDD 244

Query: 260 XXXXGNLPQRAVPFYRVVPLPEGHRQ 285
               G LPQR VPF++VV LPEGHRQ
Sbjct: 245 DEEDGALPQRTVPFHKVVALPEGHRQ 270



>AT5G40550.1 | chr5:16241285-16243100 FORWARD LENGTH=274
          Length = 273

 Score =  283 bits (723), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/270 (57%), Positives = 197/270 (72%), Gaps = 8/270 (2%)

Query: 23  DIASLLDKAKELDQLRKEQDEVVTEINKMHKKILSSPEMVDKQVDATLIRLRALYTRAKE 82
           DI  +L+  KELD+LRK+Q+EV+ EINKMHKK+ +SPE+V+K  D +L +L+ LY +AKE
Sbjct: 5   DIVGILENTKELDRLRKDQEEVLVEINKMHKKLQASPEIVEKPGDISLAKLKNLYIQAKE 64

Query: 83  LCESEVSASSALVGLLDGLLQSGTSAAQRKKIEV----GEQKKKRMKSDTDTTRFSSASM 138
           L E+EV+ S+ L+  LD LL  G +  QR+K+ V     +QK+KRMK D+D  R  S SM
Sbjct: 65  LSENEVTVSNILLTQLDLLLPYGPTGQQRRKLGVVAEGNDQKRKRMKVDSDVIRL-SPSM 123

Query: 139 RSQLDQATNLKGEQVAAKVKSDE-EKDEWFVVKVIHFDKETKEYEVLDEEPGDDEE-SAQ 196
           R+Q++   +LKGEQVAA+V ++  +KDEWFVVKVIHFD+ETKE EVLDEEPGDDEE S Q
Sbjct: 124 RNQIEAYASLKGEQVAARVTAESADKDEWFVVKVIHFDRETKEVEVLDEEPGDDEEGSGQ 183

Query: 197 KKYKLPMSDIIPFPKRGDPSSAPDFGQGRQVLAVYPSTTALYRATVASN-RKRKSXXXXX 255
           + YKLPM  I+PFPKR DPS+  +F  G+ VLAVYP TTALY+ATV S  RKRKS     
Sbjct: 184 RTYKLPMLCILPFPKRNDPSNTQEFPPGKHVLAVYPGTTALYKATVVSTPRKRKSDEYLL 243

Query: 256 XXXXXXXXGNLPQRAVPFYRVVPLPEGHRQ 285
                   G LPQR VPF++VV LPEGHRQ
Sbjct: 244 EFDDDEEDGALPQRTVPFHKVVALPEGHRQ 273



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.127    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,301,458
Number of extensions: 219949
Number of successful extensions: 1124
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1118
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 188
Effective length of database: 8,447,217
Effective search space: 1588076796
Effective search space used: 1588076796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 111 (47.4 bits)