BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0273000 Os12g0273000|J065173A15
(281 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07040.1 | chr3:2226244-2229024 REVERSE LENGTH=927 72 3e-13
AT1G50180.1 | chr1:18584235-18587136 FORWARD LENGTH=858 66 2e-11
AT3G46730.1 | chr3:17213069-17215612 REVERSE LENGTH=848 61 7e-10
AT1G58400.1 | chr1:21696165-21699118 REVERSE LENGTH=901 54 1e-07
AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853 53 2e-07
AT1G59780.1 | chr1:21993581-21997691 REVERSE LENGTH=907 52 4e-07
AT1G58390.1 | chr1:21690962-21693891 REVERSE LENGTH=908 52 4e-07
AT1G59124.1 | chr1:21816832-21819653 FORWARD LENGTH=856 49 2e-06
AT1G58807.1 | chr1:21780574-21783793 FORWARD LENGTH=1018 49 3e-06
AT1G59218.1 | chr1:21828398-21831713 FORWARD LENGTH=1050 49 3e-06
AT1G58848.1 | chr1:21792140-21795455 FORWARD LENGTH=1050 49 3e-06
AT1G58410.1 | chr1:21701286-21704255 REVERSE LENGTH=900 48 5e-06
AT3G46530.1 | chr3:17130739-17133246 REVERSE LENGTH=836 48 7e-06
>AT3G07040.1 | chr3:2226244-2229024 REVERSE LENGTH=927
Length = 926
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 119/272 (43%), Gaps = 36/272 (13%)
Query: 30 LLKGVNSDIRFLRDELTAINNFLINMSNMEENLGEQEKEW---------RNRVREIEDCI 80
LL GV+ +I ++ EL + +FL + N R+ +IED +
Sbjct: 23 LLSGVHGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVANTRDLAYQIEDIL 82
Query: 81 DLFMRKFNHGDVDANFVRRTAKKIGMLWSRHEIASQIHQLKDCVNEESARRLRYRFGESN 140
D F HG + R +W+RH IA ++ + + S RY E+
Sbjct: 83 DEFGYHI-HGYRSCAKIWRAFHFPRYMWARHSIAQKLGMVNVMIQSISDSMKRYYHSENY 141
Query: 141 --ARIVEIDPG---------LPALYVEAEKLVGIHGPMEKIIDLLTKQDGSSQQLKVVSI 189
A + ID G +L+ LVGI P K+I L + Q VV++
Sbjct: 142 QAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPE---PQRIVVAV 198
Query: 190 VGFGGLGKTTLANQVLK--KIKHQFDCTALVSISRSPDIKKILFVLLKDMINKNNSNDEK 247
VG GG GKTTL+ + K ++ F+ A V+IS+S I+ + ++K+ + ++
Sbjct: 199 VGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQ--- 255
Query: 248 HKKVVGIKAE-KSDDEKQLINKLREYLTSRRW 278
I AE S ++L+ KL EYL S+R+
Sbjct: 256 ------IPAELYSLGYRELVEKLVEYLQSKRY 281
>AT1G50180.1 | chr1:18584235-18587136 FORWARD LENGTH=858
Length = 857
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 33 GVNSDIRFLRDELTAINNFLINMSNMEENLGEQEKEWRNRVREI----EDCIDLFMRKFN 88
G+ ++ L+DEL +N FL + ++ +++ E+ + W +RE ED ++ F K
Sbjct: 26 GIGDQVKQLQDELKRLNCFLKD-ADEKQHESERVRNWVAGIREASYDAEDILEAFFLKAE 84
Query: 89 HGDVDA--NFVRRTAKKIGMLWSRHEIASQIHQLKDCVNEESARRLRYRFGESNAR---- 142
+RR A + S H + S+I ++ +++ +A L + ES R
Sbjct: 85 SRKQKGMKRVLRRLACILNEAVSLHSVGSEIREITSRLSKIAASMLDFGIKESMGREGLS 144
Query: 143 ----IVEIDPGLPALYVEAEKLVGIHGPMEKIIDLLTKQDGSSQQLKVVSIVGFGGLGKT 198
+ E P YV LVG+ +EK+++ L ++L+V SI G GGLGKT
Sbjct: 145 LSDSLREQRQSFP--YVVEHNLVGLEQSLEKLVNDLV---SGGEKLRVTSICGMGGLGKT 199
Query: 199 TLANQVL--KKIKHQFDCTALVSISR 222
TLA Q+ K++ FD A V +S+
Sbjct: 200 TLAKQIFHHHKVRRHFDRFAWVYVSQ 225
>AT3G46730.1 | chr3:17213069-17215612 REVERSE LENGTH=848
Length = 847
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 22/223 (9%)
Query: 31 LKGVNSDIRFLRDELTAINNFLINMSNMEENLGEQEKEWRNRV----REIEDCIDLFMRK 86
L GV D+ L+ ELT I+ +L ++ E E KEW V +IED +D + K
Sbjct: 24 LMGVKDDLEELKTELTCIHGYLKDVEARERE-DEVSKEWTKLVLDIAYDIEDVLDTYFLK 82
Query: 87 FNHGDVDANFVRRTAKKIGMLWSRHEIASQIHQLKDCVNEESARRLRYRFGE-------- 138
+ +R T KIG + I I LK + + + +R + G
Sbjct: 83 LEERSLRRGLLRLT-NKIGKKRDAYNIVEDIRTLKRRILDITRKRETFGIGSFNEPRGEN 141
Query: 139 -SNARIVEIDPGLPALYVEAEKLV-GIHGPMEKIIDLLTKQDGSSQQLKVVSIVGFGGLG 196
+N R+ ++ P V+ E+LV G+ + KI+ + D + ++SI G GGLG
Sbjct: 142 ITNVRVRQLRRAPP---VDQEELVVGLEDDV-KILLVKLLSDNEKDKSYIISIFGMGGLG 197
Query: 197 KTTLANQVLKK--IKHQFDCTALVSISRSPDIKKILFVLLKDM 237
KT LA ++ +K +FDC A +S+ + IL +++ +
Sbjct: 198 KTALARKLYNSGDVKRRFDCRAWTYVSQEYKTRDILIRIIRSL 240
>AT1G58400.1 | chr1:21696165-21699118 REVERSE LENGTH=901
Length = 900
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Query: 160 LVGIHGPMEKIIDLLTKQDGSSQQLKVVSIVGFGGLGKTTLANQVL--KKIKHQFDCTAL 217
VG+ ++K++ L ++D +++VS+ G GGLGKTTLA QV + +KHQFD A
Sbjct: 164 FVGLEVNVKKLVGYLVEED----DIQIVSVTGMGGLGKTTLARQVFNHEDVKHQFDRLAW 219
Query: 218 VSISRSPDIKKILFVLLKDMINKNNSND 245
V +S+ K + ++L+++ ++ ++
Sbjct: 220 VCVSQEFTRKNVWQMILQNLTSRETKDE 247
>AT3G50950.2 | chr3:18936127-18938685 FORWARD LENGTH=853
Length = 852
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 69/122 (56%), Gaps = 20/122 (16%)
Query: 159 KLVGIHGPMEKIIDLLTKQDGSSQQLKVVSIVGFGGLGKTTLANQVL--KKIKHQFDCTA 216
++VG+ G KI + L + + S QL +++ VG GGLGKTT+A +V K+I+H+F+
Sbjct: 159 QVVGLEGDKRKIKEWLFRSNDS--QLLIMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRI 216
Query: 217 LVSISRSPDIKKILFVLLKDMINKNNSNDEKHKKVVGIKAEKSDDEKQLINKLREYLTSR 276
VS+S++ ++I+ +L+++ + A DD L+ K+++YL +
Sbjct: 217 WVSVSQTFTEEQIMRSILRNLGD----------------ASVGDDIGTLLRKIQQYLLGK 260
Query: 277 RW 278
R+
Sbjct: 261 RY 262
>AT1G59780.1 | chr1:21993581-21997691 REVERSE LENGTH=907
Length = 906
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 102/254 (40%), Gaps = 72/254 (28%)
Query: 28 YRLLKGVNSDIRFLRDELTAINNFLINMSNMEENLGEQEKEWRNRVREI-------EDCI 80
Y +GV I LRD+L + FL + ++ RN + EI ED I
Sbjct: 26 YERFQGVEEQITELRDDLKMLMAFLSDADAKKQTRALA----RNCLEEIKEITYDAEDII 81
Query: 81 DLFMRKFNHGDVDANFVRRTAKKIGMLWSRHEIASQIHQLKDCVNE-------------- 126
++F+ K G V+ +R A G R EIA QI + +++
Sbjct: 82 EIFLLK---GSVN---MRSLACFPG---GRREIALQITSISKRISKVIQVMQNLGIKSDI 132
Query: 127 ----------ESARRLRYRFG---ESNARIVEIDPGLPALYVEAEKLVGIHGPMEKIIDL 173
E R LR+ F ESN LVG+ +EK+++
Sbjct: 133 MDGVDSHAQLERKRELRHTFSSESESN-------------------LVGLEKNVEKLVEE 173
Query: 174 LTKQDGSSQQLKVVSIVGFGGLGKTTLANQVL--KKIKHQFDCTALVSISRSPDIKKILF 231
L D S VSI G GGLGKTTLA Q+ K+K FD A V +S+ K +
Sbjct: 174 LVGNDSSHG----VSITGLGGLGKTTLARQIFDHDKVKSHFDGLAWVCVSQEFTRKDVWK 229
Query: 232 VLLKDMINKNNSND 245
+L ++ K +D
Sbjct: 230 TILGNLSPKYKDSD 243
>AT1G58390.1 | chr1:21690962-21693891 REVERSE LENGTH=908
Length = 907
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 12/110 (10%)
Query: 160 LVGIHGPMEKIIDLLTKQDGSSQQLKVVSIVGFGGLGKTTLANQVL--KKIKHQFDCTAL 217
VG+ ++K++ L + + ++VVSI G GGLGKTTLA QV + +KHQFD A
Sbjct: 163 FVGLEVNVKKLVGYLVDE----ENVQVVSITGMGGLGKTTLARQVFNHEDVKHQFDRLAW 218
Query: 218 VSISRSPDIKKILFVLLKDMINKNNSNDEKHKKVVGI-KAEKSDDEKQLI 266
V +S+ K + MI +N ++ EK +++ + +AE D QL+
Sbjct: 219 VCVSQEFTRKNVW-----QMILQNLTSREKKDEILQMEEAELHDKLFQLL 263
>AT1G59124.1 | chr1:21816832-21819653 FORWARD LENGTH=856
Length = 855
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 160 LVGIHGPMEKIIDLLTKQDGSSQQLKVVSIVGFGGLGKTTLANQVL--KKIKHQFDCTAL 217
VG+ ++K++ L + ++VVSI G GGLGKTTLA QV + +KHQFD +
Sbjct: 163 FVGLEANVKKLVGYLVDE----ANVQVVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSW 218
Query: 218 VSISR 222
V +S+
Sbjct: 219 VCVSQ 223
>AT1G58807.1 | chr1:21780574-21783793 FORWARD LENGTH=1018
Length = 1017
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 160 LVGIHGPMEKIIDLLTKQDGSSQQLKVVSIVGFGGLGKTTLANQVL--KKIKHQFDCTAL 217
VG+ ++K++ L + ++VVSI G GGLGKTTLA QV + +KHQFD +
Sbjct: 163 FVGLEANVKKLVGYLVDE----ANVQVVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSW 218
Query: 218 VSISR 222
V +S+
Sbjct: 219 VCVSQ 223
>AT1G59218.1 | chr1:21828398-21831713 FORWARD LENGTH=1050
Length = 1049
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 160 LVGIHGPMEKIIDLLTKQDGSSQQLKVVSIVGFGGLGKTTLANQVL--KKIKHQFDCTAL 217
VG+ ++K++ L + ++VVSI G GGLGKTTLA QV + +KHQFD +
Sbjct: 163 FVGLEANVKKLVGYLVDE----ANVQVVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSW 218
Query: 218 VSISR 222
V +S+
Sbjct: 219 VCVSQ 223
>AT1G58848.1 | chr1:21792140-21795455 FORWARD LENGTH=1050
Length = 1049
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 160 LVGIHGPMEKIIDLLTKQDGSSQQLKVVSIVGFGGLGKTTLANQVL--KKIKHQFDCTAL 217
VG+ ++K++ L + ++VVSI G GGLGKTTLA QV + +KHQFD +
Sbjct: 163 FVGLEANVKKLVGYLVDE----ANVQVVSITGMGGLGKTTLAKQVFNHEDVKHQFDGLSW 218
Query: 218 VSISR 222
V +S+
Sbjct: 219 VCVSQ 223
>AT1G58410.1 | chr1:21701286-21704255 REVERSE LENGTH=900
Length = 899
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 110/253 (43%), Gaps = 51/253 (20%)
Query: 28 YRLLKGVNSDIRFLRDELTAINNFLINMS---NMEENLGEQEKEWRNRVREIEDCIDLFM 84
Y KGV + L+ L + +FL + ++ E + +E ++ V + ED I+ F+
Sbjct: 19 YDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVEEIKDIVYDTEDIIETFI 78
Query: 85 RKFNHGDVDANFVRRTAKKIGMLWSRHEIASQIHQLKDCVN------------------- 125
K ++ ++R + + R E+AS I + ++
Sbjct: 79 LK-EKVEMKRGIMKRIKRFASTIMDRRELASDIGGISKRISKVIQDMQSFGVQQIITDGS 137
Query: 126 ------EESARRLRYRFGESNARIVEIDPGLPALYVEAEKLVGIHGPMEKIIDLLTKQDG 179
+E R +R+ F +R E D VG+ ++K++ L ++D
Sbjct: 138 RSSHPLQERQREMRHTF----SRDSEND------------FVGMEANVKKLVGYLVEKD- 180
Query: 180 SSQQLKVVSIVGFGGLGKTTLANQVLKK--IKHQFDCTALVSISRSPDIKKILFVLLKDM 237
++VS+ G GGLGKTTLA QV +K +FD A VS+S+ + +L+++
Sbjct: 181 ---DYQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNL 237
Query: 238 INKNNSNDEKHKK 250
+K ++ ++ K
Sbjct: 238 TSKERKDEIQNMK 250
>AT3G46530.1 | chr3:17130739-17133246 REVERSE LENGTH=836
Length = 835
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 18/235 (7%)
Query: 30 LLKGVNSDIRFLRDELTAINNFLINMSNMEENLGEQEKEWRNRV----REIEDCIDLFMR 85
+ V D+ L+ ELT I+ +L ++ E E KEW V ++ED +D +
Sbjct: 23 MFMAVKEDLEELKTELTCIHGYLKDVEARERE-DEVSKEWSKLVLDFAYDVEDVLDTYHL 81
Query: 86 KFNHGDVDANFVRRTAKKIGMLWSRHEIASQIHQLKDCVNEESARRLRYRFGE------- 138
K +RR KIG + I I LK + + + +R Y G
Sbjct: 82 KLEERS-QRRGLRRLTNKIGRKMDAYSIVDDIRILKRRILDITRKRETYGIGGLKEPQGG 140
Query: 139 SNARIVEIDPGLPALYVEAEKLV-GIHGPMEKIIDLLTKQDGSSQQLKVVSIVGFGGLGK 197
N + + A V+ E++V G+ + +++ L D + ++SI G GGLGK
Sbjct: 141 GNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLL--DYEEKNRFIISIFGMGGLGK 198
Query: 198 TTLANQVL--KKIKHQFDCTALVSISRSPDIKKILFVLLKDMINKNNSNDEKHKK 250
T LA ++ + +K +F+ A +S+ IL +++ + + EK +K
Sbjct: 199 TALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEELEKIRK 253
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,602,227
Number of extensions: 231092
Number of successful extensions: 1319
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 1322
Number of HSP's successfully gapped: 19
Length of query: 281
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 184
Effective length of database: 8,447,217
Effective search space: 1554287928
Effective search space used: 1554287928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)