BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0265600 Os12g0265600|AK111044
(254 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62620.1 | chr5:25137136-25139764 FORWARD LENGTH=682 127 4e-30
AT1G27120.1 | chr1:9421389-9423910 FORWARD LENGTH=674 123 1e-28
AT1G74800.1 | chr1:28102221-28104993 REVERSE LENGTH=673 120 7e-28
AT4G21060.1 | chr4:11240730-11244860 FORWARD LENGTH=742 103 1e-22
>AT5G62620.1 | chr5:25137136-25139764 FORWARD LENGTH=682
Length = 681
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 71/86 (82%)
Query: 154 PKIAVLSKGEQPIMVSQFMMELRGLKTVDGEDPPHILHFNPRLRGDWSSRPVIEQNTCYR 213
PKI++L +G++ + VSQF +EL+GLK V+GE+PP ILH NPRL+GDWS +PVIEQNTCYR
Sbjct: 216 PKISMLKEGDEAVKVSQFKLELQGLKAVEGEEPPRILHLNPRLKGDWSGKPVIEQNTCYR 275
Query: 214 MQWGAPLRCEGWKSHSDEETGWGPLQ 239
MQWG+ RCEGW+S DEET G ++
Sbjct: 276 MQWGSAQRCEGWRSRDDEETVDGQVK 301
>AT1G27120.1 | chr1:9421389-9423910 FORWARD LENGTH=674
Length = 673
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 66/82 (80%)
Query: 158 VLSKGEQPIMVSQFMMELRGLKTVDGEDPPHILHFNPRLRGDWSSRPVIEQNTCYRMQWG 217
V G++ MVSQFMMEL+GLK VDGEDPP ILHFNPR++GDWS RPVIEQNTCYRMQWG
Sbjct: 210 VEKDGDKTAMVSQFMMELQGLKAVDGEDPPRILHFNPRIKGDWSGRPVIEQNTCYRMQWG 269
Query: 218 APLRCEGWKSHSDEETGWGPLQ 239
+ LRC+G +S DEE G ++
Sbjct: 270 SGLRCDGRESSDDEEYVDGEVK 291
>AT1G74800.1 | chr1:28102221-28104993 REVERSE LENGTH=673
Length = 672
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 66/80 (82%)
Query: 154 PKIAVLSKGEQPIMVSQFMMELRGLKTVDGEDPPHILHFNPRLRGDWSSRPVIEQNTCYR 213
P+ A +G+ +VSQF++EL+GLKTV+GEDPP ILHFNPRL+GDWS +PVIEQN+CYR
Sbjct: 211 PRKAHPKEGDWSKLVSQFVIELQGLKTVEGEDPPRILHFNPRLKGDWSKKPVIEQNSCYR 270
Query: 214 MQWGAPLRCEGWKSHSDEET 233
MQWG RCEGWKS DEET
Sbjct: 271 MQWGPAQRCEGWKSRDDEET 290
>AT4G21060.1 | chr4:11240730-11244860 FORWARD LENGTH=742
Length = 741
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 59/80 (73%)
Query: 154 PKIAVLSKGEQPIMVSQFMMELRGLKTVDGEDPPHILHFNPRLRGDWSSRPVIEQNTCYR 213
P+ + L++ ++VSQFM+EL+GLKT DGE PP ILH NPR++GDW+ RPVIE NTCYR
Sbjct: 277 PQRSRLTRSYGMVLVSQFMVELQGLKTGDGEYPPKILHLNPRIKGDWNHRPVIEHNTCYR 336
Query: 214 MQWGAPLRCEGWKSHSDEET 233
MQWG RC+G S D +
Sbjct: 337 MQWGVAQRCDGTPSKKDADV 356
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.141 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,028,583
Number of extensions: 132388
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 4
Length of query: 254
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 158
Effective length of database: 8,474,633
Effective search space: 1338992014
Effective search space used: 1338992014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)