BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0244500 Os12g0244500|AK102026
         (167 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01640.1  | chr2:283085-284034 FORWARD LENGTH=157              100   3e-22

>AT2G01640.1 | chr2:283085-284034 FORWARD LENGTH=157
          Length = 156

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 32  FYTKVKDAVTSLNATKTICXXXXXXXXXXXLKAYDLSMLSEFLPETDASNLHT----EAK 87
           FYTKVKD VTSL+  K I            LKAYDL+ LSEFLPE +A         E K
Sbjct: 24  FYTKVKDTVTSLSVQKEIGKKKKIRSRQKKLKAYDLTNLSEFLPEFNALQKSALPAPELK 83

Query: 88  LNCKSKQALVQREAAQLNAVLTNPQFQLDPFAAIHQHLLSTQPPSARK 135
           +NCK +Q LV  E  +LN VL +P FQ DP  +I QHLLS QPP   K
Sbjct: 84  MNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQHLLSQQPPVEEK 131



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.125    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,981,796
Number of extensions: 49984
Number of successful extensions: 104
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 76
Effective length of database: 8,611,713
Effective search space: 654490188
Effective search space used: 654490188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)