BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0241000 Os12g0241000|AK068925
         (183 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67620.1  | chr1:25340585-25341770 FORWARD LENGTH=185          147   3e-36

>AT1G67620.1 | chr1:25340585-25341770 FORWARD LENGTH=185
          Length = 184

 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/143 (51%), Positives = 103/143 (72%), Gaps = 7/143 (4%)

Query: 41  LLELPEVEKVLRDVRAGDVRVFPVGEGGLHGGSCADYMVVATGRSDWHVRNIAQALLYKI 100
           +L LPEVEK+L DV+A +V V P           AD+ V+ATGRSDWH+RNIAQAL+Y+ 
Sbjct: 44  ILTLPEVEKILADVKADNVTVIPTHNHCF----WADFTVIATGRSDWHLRNIAQALVYRA 99

Query: 101 KQKQKGSDRILMPSVEGQQAGKWIVIDSGSIIIHALEERAREYYDLESIWTKEVS-PNIS 159
           KQKQKG+  +++PSV+G  + KWIVID G  ++HAL+E+AR Y++LES+W+ E S  + S
Sbjct: 100 KQKQKGAKHVMLPSVQGYNS-KWIVIDYGKFVVHALDEKARGYFNLESLWSAESSGTDTS 158

Query: 160 VQELETSLVKTRRRDHSQ-KPMK 181
            Q+L+   VK R +++S+ KP K
Sbjct: 159 DQDLQNVFVKVRPKNNSKRKPAK 181



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,503,493
Number of extensions: 127754
Number of successful extensions: 331
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 91
Effective length of database: 8,584,297
Effective search space: 781171027
Effective search space used: 781171027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)