BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0239900 Os12g0239900|AK107869
         (72 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37280.1  | chr2:15650400-15656417 FORWARD LENGTH=1414          77   2e-15
AT4G15236.1  | chr4:8696683-8702727 FORWARD LENGTH=1389            67   2e-12
AT4G15230.1  | chr4:8680295-8686880 FORWARD LENGTH=1401            65   6e-12
AT3G53480.1  | chr3:19825366-19831644 FORWARD LENGTH=1451          65   6e-12
AT4G15215.1  | chr4:8672070-8678874 FORWARD LENGTH=1391            62   6e-11

>AT2G37280.1 | chr2:15650400-15656417 FORWARD LENGTH=1414
          Length = 1413

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 1    TLNLLFTTQFGFEDNSNILVFGETKPIAAFVRDYFGFHRELLPLSAIILAAYPVLFAILY 60
            TLNL F++Q+G + +  I  FGETK +A+F+ DYFGFH + L ++AIIL A+P+  A +Y
Sbjct: 1343 TLNLFFSSQYG-DIHQKINAFGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMY 1401

Query: 61   GYSISRFNFQKR 72
             + +++ NFQKR
Sbjct: 1402 AFFVAKLNFQKR 1413



>AT4G15236.1 | chr4:8696683-8702727 FORWARD LENGTH=1389
          Length = 1388

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 2    LNLLFTTQFGFEDNSNILVFGETKPIAAFVRDYFGFHRELLPLSAIILAAYPVLFAILYG 61
            LN L T+Q+G +    IL FGE K ++AF+ DYFG+  + L L A++L A+P+L A L+ 
Sbjct: 1319 LNGLLTSQYG-DMEKEILAFGEKKKVSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFA 1377

Query: 62   YSISRFNFQKR 72
            + I + NFQK+
Sbjct: 1378 FFIGKLNFQKK 1388



>AT4G15230.1 | chr4:8680295-8686880 FORWARD LENGTH=1401
          Length = 1400

 Score = 65.5 bits (158), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 5    LFTTQFGFEDNSNILVFGETKPIAAFVRDYFGFHRELLPLSAIILAAYPVLFAILYGYSI 64
            L ++Q+G  D   ILVFGE K ++AF+ DYFG+  E L + A +L AYP++ A L+ + +
Sbjct: 1334 LLSSQYGDVDKE-ILVFGEKKRVSAFLEDYFGYKHESLAVVAFVLIAYPIIVATLFAFFM 1392

Query: 65   SRFNFQKR 72
            S+ +FQK+
Sbjct: 1393 SKLSFQKK 1400



>AT3G53480.1 | chr3:19825366-19831644 FORWARD LENGTH=1451
          Length = 1450

 Score = 65.5 bits (158), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 1    TLNLLFTTQFGFEDNSNILVFGETKPIAAFVRDYFGFHRELLPLSAIILAAYPVLFAILY 60
            TLN   ++Q+G + +  I VFG++  +A F++DYFGFH +LL ++A++  A+P+  A ++
Sbjct: 1380 TLNGFISSQYG-DIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMF 1438

Query: 61   GYSISRFNFQKR 72
             + + + NFQ+R
Sbjct: 1439 AFFVGKLNFQRR 1450



>AT4G15215.1 | chr4:8672070-8678874 FORWARD LENGTH=1391
          Length = 1390

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 5    LFTTQFGFEDNSNILVFGETKPIAAFVRDYFGFHRELLPLSAIILAAYPVLFAILYGYSI 64
            L ++Q+G +    I VFGE K ++AF+ DYFG+  + L + A +L A+P++ A L+ + +
Sbjct: 1324 LLSSQYG-DVEKEITVFGEKKSVSAFLEDYFGYKHDSLAVVAFVLIAFPIIVASLFAFFM 1382

Query: 65   SRFNFQKR 72
            S+ NFQK+
Sbjct: 1383 SKLNFQKK 1390



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.332    0.148    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,515,500
Number of extensions: 48803
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 5
Length of query: 72
Length of database: 11,106,569
Length adjustment: 44
Effective length of query: 28
Effective length of database: 9,900,265
Effective search space: 277207420
Effective search space used: 277207420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 104 (44.7 bits)