BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0225900 Os12g0225900|J100068F02
(111 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59845.1 | chr3:22106421-22107785 REVERSE LENGTH=347 92 7e-20
AT3G03080.1 | chr3:698530-700278 REVERSE LENGTH=351 91 1e-19
AT1G26320.1 | chr1:9105240-9107029 FORWARD LENGTH=352 91 1e-19
AT5G16960.1 | chr5:5574537-5575884 REVERSE LENGTH=347 90 3e-19
AT5G38000.1 | chr5:15141810-15143367 FORWARD LENGTH=354 89 5e-19
AT5G16970.1 | chr5:5576291-5578001 REVERSE LENGTH=346 89 5e-19
AT5G16990.1 | chr5:5581831-5583849 REVERSE LENGTH=344 89 6e-19
AT5G37940.1 | chr5:15107312-15108820 FORWARD LENGTH=354 88 1e-18
AT5G37980.1 | chr5:15131405-15132940 FORWARD LENGTH=354 88 1e-18
AT5G16980.2 | chr5:5579202-5580889 REVERSE LENGTH=306 87 2e-18
AT1G65560.1 | chr1:24371608-24373673 REVERSE LENGTH=351 87 2e-18
AT5G17000.1 | chr5:5584983-5586991 REVERSE LENGTH=346 86 3e-18
>AT3G59845.1 | chr3:22106421-22107785 REVERSE LENGTH=347
Length = 346
Score = 91.7 bits (226), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 49/57 (85%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
G+ GLTAY GFFE+ PKKGD VFVSAASGAVGQ+VGQ AK+ GCYVVGSAGS +KV
Sbjct: 140 GMIGLTAYAGFFEICSPKKGDTVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKQKV 196
>AT3G03080.1 | chr3:698530-700278 REVERSE LENGTH=351
Length = 350
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 50/57 (87%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
G+ G+TAY GF+E+ PKKG+ VFVSAASGAVGQ+VGQ AKI GCYVVGSAGS+EKV
Sbjct: 142 GMPGMTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKIMGCYVVGSAGSNEKV 198
>AT1G26320.1 | chr1:9105240-9107029 FORWARD LENGTH=352
Length = 351
Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/58 (74%), Positives = 50/58 (86%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKVF 73
G+ G+TAY GF+EV PKKG+ VFVSAASGAVGQ+VGQ AK+ GCYVVGSAGS EKV+
Sbjct: 143 GMPGMTAYAGFYEVCSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVY 200
>AT5G16960.1 | chr5:5574537-5575884 REVERSE LENGTH=347
Length = 346
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 49/57 (85%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
G+ G+TAY GF+E+ PKKGD VFVSAASGAVGQ+VGQ AK+ GCYVVGSAGS EKV
Sbjct: 138 GMPGMTAYVGFYEICTPKKGDTVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKV 194
>AT5G38000.1 | chr5:15141810-15143367 FORWARD LENGTH=354
Length = 353
Score = 88.6 bits (218), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 49/57 (85%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
GI GLTAY GF+E+ PKKG+ VFVSAASGAVGQ+VGQ AK+ GCYVVGSA S+EKV
Sbjct: 145 GIPGLTAYIGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVVGSASSEEKV 201
>AT5G16970.1 | chr5:5576291-5578001 REVERSE LENGTH=346
Length = 345
Score = 88.6 bits (218), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 50/57 (87%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
G+ G+TAY GF+EV PK+G+ V+VSAASGAVGQ+VGQLAK+ GCYVVGSAGS EKV
Sbjct: 137 GMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKV 193
>AT5G16990.1 | chr5:5581831-5583849 REVERSE LENGTH=344
Length = 343
Score = 88.6 bits (218), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 49/57 (85%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
G+ G+TAY GF+EV PKKG+ V+VSAASGAVGQ+VGQ AK+ GCYVVGSAGS EKV
Sbjct: 135 GMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKV 191
>AT5G37940.1 | chr5:15107312-15108820 FORWARD LENGTH=354
Length = 353
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 48/57 (84%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
GI GLTAY GF+E+ PKKG+ VFVSAASGAVGQ+VGQ AK+ GCYVVGSA S EKV
Sbjct: 145 GIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVVGSASSKEKV 201
>AT5G37980.1 | chr5:15131405-15132940 FORWARD LENGTH=354
Length = 353
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 48/57 (84%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
GI GLTAY GF+E+ PKKG+ VFVSAASGAVGQ+VGQ AK+ GCYVVGSA S EKV
Sbjct: 145 GIPGLTAYVGFYEICSPKKGETVFVSAASGAVGQLVGQFAKMAGCYVVGSASSKEKV 201
>AT5G16980.2 | chr5:5579202-5580889 REVERSE LENGTH=306
Length = 305
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
G+ G+TAY GF+E+ PKKG+ V+VSAASGAVGQ+VGQ AK+ GCYVVGSAGS EKV
Sbjct: 97 GMPGMTAYVGFYEICSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKV 153
>AT1G65560.1 | chr1:24371608-24373673 REVERSE LENGTH=351
Length = 350
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 48/57 (84%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
G+AG TAY GF E+ PKKGD VFVSAA GAVGQ+VGQLAK+ GCYVVGSAGS +KV
Sbjct: 141 GMAGFTAYAGFNEICCPKKGDSVFVSAACGAVGQLVGQLAKLHGCYVVGSAGSKQKV 197
>AT5G17000.1 | chr5:5584983-5586991 REVERSE LENGTH=346
Length = 345
Score = 86.3 bits (212), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 16 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKV 72
G+ G+TAY GF+EV PK+G+ V+VSAASGAVGQ+VGQ AK+ GCYVVGSAGS EKV
Sbjct: 137 GMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSTEKV 193
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,987,132
Number of extensions: 68404
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 12
Length of query: 111
Length of database: 11,106,569
Length adjustment: 80
Effective length of query: 31
Effective length of database: 8,913,289
Effective search space: 276311959
Effective search space used: 276311959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)