BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0210800 Os12g0210800|AY224480
(291 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G16340.4 | chr1:5588123-5590469 REVERSE LENGTH=294 497 e-141
AT1G79500.5 | chr1:29903797-29907730 FORWARD LENGTH=337 439 e-123
>AT1G16340.4 | chr1:5588123-5590469 REVERSE LENGTH=294
Length = 293
Score = 497 bits (1279), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/293 (81%), Positives = 262/293 (89%), Gaps = 2/293 (0%)
Query: 1 MDASSVALYGQLKAAQPFFLLAGPNVIESEEHVLKMAKHIKGITTK--LGLPLVFKSSFD 58
M S+ LY QLK A+PFFLLAGPNVIESEEHVL+MAK IK I+TK LGLPLVFKSSFD
Sbjct: 1 MANSASLLYDQLKVAEPFFLLAGPNVIESEEHVLRMAKSIKDISTKYVLGLPLVFKSSFD 60
Query: 59 KANRTSSKSFRGPGLEEGLKILEKVKATYDIPVVTDVHESHQCEAVGRVADIIQIPAFLC 118
KANRTSSKSFRGPG+ EGLKILEKVK +D+P+VTDVHES QCEAVG+VADIIQIPAFLC
Sbjct: 61 KANRTSSKSFRGPGMAEGLKILEKVKVAFDLPIVTDVHESSQCEAVGKVADIIQIPAFLC 120
Query: 119 RQTDLLVAAAKTGKIINIKKGQFCAPSVMANSAEKIRLAGNQNVMVCERGTMFGYNDLIV 178
RQTDLLVAAA++GKIINIKKGQFC SVM NSAEK+RLAGN NVMVCERGTMFGYNDLIV
Sbjct: 121 RQTDLLVAAAQSGKIINIKKGQFCGHSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 180
Query: 179 DPRNFEWLREANCPVVADVTHALQQPAGKKLDGGGVASGGLRELIPCIARTSVAVGVDGI 238
DPRN EW+REA+CPVVAD+TH+LQQPAGKKLDGGGVASGGLRELIPCIART+VAVGVDGI
Sbjct: 181 DPRNLEWMREADCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGI 240
Query: 239 FMEVHDDPLNAPCDGPTQWPLRNXXXXXXXXIAIARVTKGKKPLKIDLTPFKE 291
FMEVHDDPLNAP DGPTQWPLR+ IAIA VTKGK+ +IDLTP+++
Sbjct: 241 FMEVHDDPLNAPVDGPTQWPLRHLEELLEELIAIASVTKGKQQFQIDLTPYRD 293
>AT1G79500.5 | chr1:29903797-29907730 FORWARD LENGTH=337
Length = 336
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 205/226 (90%), Positives = 218/226 (96%)
Query: 36 MAKHIKGITTKLGLPLVFKSSFDKANRTSSKSFRGPGLEEGLKILEKVKATYDIPVVTDV 95
MAKHIK I+TK+GLPLVFKSSFDKANRTSSKSFRGPG+ EGLKILEKVK YD+P+VTDV
Sbjct: 1 MAKHIKDISTKVGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDV 60
Query: 96 HESHQCEAVGRVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMANSAEKIR 155
HES QCEAVG+VADIIQIPAFLCRQTDLLVAAA+TGKIINIKKGQFCAPSVM NSAEKIR
Sbjct: 61 HESSQCEAVGKVADIIQIPAFLCRQTDLLVAAAQTGKIINIKKGQFCAPSVMENSAEKIR 120
Query: 156 LAGNQNVMVCERGTMFGYNDLIVDPRNFEWLREANCPVVADVTHALQQPAGKKLDGGGVA 215
LAGN NVMVCERGTMFGYNDLIVDPRNFEW+REANCPVVAD+TH+LQQPAGKKLDGGGVA
Sbjct: 121 LAGNPNVMVCERGTMFGYNDLIVDPRNFEWMREANCPVVADITHSLQQPAGKKLDGGGVA 180
Query: 216 SGGLRELIPCIARTSVAVGVDGIFMEVHDDPLNAPCDGPTQWPLRN 261
SGGLRELIPCIART+VAVGVDGIFMEVHDDPL+AP DGPTQWPLR+
Sbjct: 181 SGGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRH 226
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,934,851
Number of extensions: 237976
Number of successful extensions: 452
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 2
Length of query: 291
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,419,801
Effective search space: 1625021593
Effective search space used: 1625021593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)