BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0210300 Os12g0210300|AK065921
(212 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02380.1 | chr2:626878-628569 FORWARD LENGTH=224 209 1e-54
AT2G02390.3 | chr2:629015-630955 FORWARD LENGTH=229 202 1e-52
AT1G74590.1 | chr1:28023887-28024666 REVERSE LENGTH=233 52 3e-07
AT1G10370.1 | chr1:3397274-3398273 REVERSE LENGTH=228 51 4e-07
AT3G09270.1 | chr3:2848407-2849226 REVERSE LENGTH=225 49 2e-06
AT1G27130.1 | chr1:9425582-9426597 FORWARD LENGTH=228 49 2e-06
AT2G29490.1 | chr2:12631593-12632360 REVERSE LENGTH=225 48 3e-06
AT2G29480.1 | chr2:12630382-12631232 REVERSE LENGTH=226 48 4e-06
>AT2G02380.1 | chr2:626878-628569 FORWARD LENGTH=224
Length = 223
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 137/209 (65%), Gaps = 4/209 (1%)
Query: 8 LYGAWISSCSHRIRIVLNLKGVDYEYKSVN----PRTDPDYEKINPIKYIPALVDGDLVV 63
LY W SSC+HR+RI L LKG+DYEY VN ++D D++KINP+ +PALVDGD+V+
Sbjct: 14 LYSYWRSSCAHRVRIALTLKGLDYEYIPVNLLKGDQSDSDFKKINPMGTVPALVDGDVVI 73
Query: 64 SDSLAIALYLEDKYPQHAXXXXXXXXXXXXXQIANIVCSSIQPLQGYAVIGLHEGKLSPD 123
+DS AI +YL+DKYP+ Q +IV S IQP Q A+ E K++ +
Sbjct: 74 NDSFAIIMYLDDKYPEPPLLPSDYHKRAVNYQATSIVMSGIQPHQNMALFRYLEDKINAE 133
Query: 124 ESLQIVQHYIDKGFKAIEKLLEGSNFKYATGDEVQLGDVFLAPQIHAGINRFQIDITKYP 183
E + + I KGF A+EKLL KYATGDEV L D+FLAPQIHA NRF I++ +P
Sbjct: 134 EKTAWITNAITKGFTALEKLLVSCAGKYATGDEVYLADLFLAPQIHAAFNRFHINMEPFP 193
Query: 184 NLARLHDTYMEIPAFQAALPKNQPDAPSC 212
LAR +++Y E+PAFQ A+P+ QPD PS
Sbjct: 194 TLARFYESYNELPAFQNAVPEKQPDTPST 222
>AT2G02390.3 | chr2:629015-630955 FORWARD LENGTH=229
Length = 228
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 139/215 (64%), Gaps = 11/215 (5%)
Query: 8 LYGAWISSCSHRIRIVLNLKGVDYEYKSVNP----------RTD-PDYEKINPIKYIPAL 56
LY W SSC+HR+RI L LKG+DYEY VN R D D++KINP+ +PAL
Sbjct: 11 LYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSVYRFDLQDFKKINPMGTVPAL 70
Query: 57 VDGDLVVSDSLAIALYLEDKYPQHAXXXXXXXXXXXXXQIANIVCSSIQPLQGYAVIGLH 116
VDGD+V++DS AI +YL++KYP+ Q +IV S IQP Q AVI
Sbjct: 71 VDGDVVINDSFAIIMYLDEKYPEPPLLPRDLHKRAVNYQAMSIVLSGIQPHQNLAVIRYI 130
Query: 117 EGKLSPDESLQIVQHYIDKGFKAIEKLLEGSNFKYATGDEVQLGDVFLAPQIHAGINRFQ 176
E K++ +E V + I KGF A+EKLL K+ATGDE+ L D+FLAPQIH INRFQ
Sbjct: 131 EEKINVEEKTAWVNNAITKGFTALEKLLVNCAGKHATGDEIYLADLFLAPQIHGAINRFQ 190
Query: 177 IDITKYPNLARLHDTYMEIPAFQAALPKNQPDAPS 211
I++ YP LA+ +++Y E+PAFQ ALP+ QPDAPS
Sbjct: 191 INMEPYPTLAKCYESYNELPAFQNALPEKQPDAPS 225
>AT1G74590.1 | chr1:28023887-28024666 REVERSE LENGTH=233
Length = 232
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 3 SSKPILYGAWISSCSHRIRIVLNLKGVDYEYKSVNPRTDPD-YEKINPI-KYIPALVDGD 60
SK IL+G WIS+ S R+ I L LKGV YEY + + + ++NP+ K IP LV
Sbjct: 5 KSKVILHGTWISTYSKRVEIALKLKGVLYEYLEEDLQNKSESLIQLNPVHKKIPVLVHDG 64
Query: 61 LVVSDSLAIALYLEDKY 77
V++SL I Y+++ +
Sbjct: 65 KPVAESLVILEYIDETW 81
>AT1G10370.1 | chr1:3397274-3398273 REVERSE LENGTH=228
Length = 227
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 14/215 (6%)
Query: 1 MASSKPILYGAWISSCSHRIRIVLNLKGVDYEYKSVNPRTDPD-YEKINPI-KYIPALVD 58
MASS L GAW S R RI LNLK V YE+ + + K NP+ K IP L+
Sbjct: 1 MASSDVKLIGAWASPFVMRPRIALNLKSVPYEFLQETFGSKSELLLKSNPVHKKIPVLLH 60
Query: 59 GDLVVSDSLAIALYLEDKYPQHAXXXXXX---XXXXXXXQIANIVCSSIQPLQGYAVIGL 115
D VS+S I Y++D + A I L+G+ G
Sbjct: 61 ADKPVSESNIIVEYIDDTWSSSGPSILPSDPYDRAMARFWAAYIDEKWFVALRGFLKAGG 120
Query: 116 HEGKLSPDESLQIVQHYIDKGFKAIEK---LLEGSNFKYATGDEVQLGDVFLA--PQIHA 170
E K + L+ +++K F K G N Y ++ LG FLA
Sbjct: 121 EEEKKAVIAQLEEGNAFLEKAFIDCSKGKPFFNGDNIGYL---DIALG-CFLAWLRVTEL 176
Query: 171 GINRFQIDITKYPNLARLHDTYMEIPAFQAALPKN 205
++ +D K P+L++ + + PA + +P+
Sbjct: 177 AVSYKILDEAKTPSLSKWAENFCNDPAVKPVMPET 211
>AT3G09270.1 | chr3:2848407-2849226 REVERSE LENGTH=225
Length = 224
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 8 LYGAWISSCSHRIRIVLNLKGVDYEY--KSVNPRTDPDYEKINPI-KYIPALVDGDLVVS 64
L G W S S R+ +VL LKG+ YEY + V P K NPI K +P L+ ++
Sbjct: 9 LLGLWGSPFSKRVEMVLKLKGIPYEYIEEDVYGNRSPMLLKYNPIHKKVPVLIHNGRSIA 68
Query: 65 DSLAIALYLEDKY 77
+SL I Y+ED +
Sbjct: 69 ESLVIVEYIEDTW 81
>AT1G27130.1 | chr1:9425582-9426597 FORWARD LENGTH=228
Length = 227
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 8 LYGAWISSCSHRIRIVLNLKGVDYEY---KSVNPRTDPDYEKINPI-KYIPALVDGDLVV 63
L G+W S S R R+ L+LK V YEY V K NPI K +P L+ GDL +
Sbjct: 9 LIGSWSSPYSLRARVALHLKSVKYEYLDEPDVLKEKSELLLKSNPIHKKVPVLLHGDLSI 68
Query: 64 SDSLAIALYLEDKYP 78
S+SL + Y+++ +P
Sbjct: 69 SESLNVVQYVDEAWP 83
>AT2G29490.1 | chr2:12631593-12632360 REVERSE LENGTH=225
Length = 224
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 20/209 (9%)
Query: 8 LYGAWISSCSHRIRIVLNLKGVDYEYKSVN-PRTDPDYEKINPI-KYIPALVDGDLVVSD 65
L G W S S R+ + L LKGV YEY + P P ++NP+ K +P LV D ++ +
Sbjct: 10 LLGFWASPFSRRVEMALKLKGVPYEYLEEDLPNKTPLLLELNPLHKKVPVLVHNDKILLE 69
Query: 66 SLAIALYLEDKYPQHAXXXXXXXXXXXXXQIANIVCSSIQPLQGYAVIGLHEGK-LSPDE 124
S I Y++ + A + I L +++ +G+ ++ +E
Sbjct: 70 SHLILEYIDQTWKNSPILPQDPYEKAMARFWAKFIDDQILTLGFRSLVKAEKGREVAIEE 129
Query: 125 SLQIVQHYIDKGFKAIEKLLEGSNFKYATGDEVQLGDV-------FLAPQIHAGINRFQI 177
+ +++ +EK + G +F G + D+ F ++ GI I
Sbjct: 130 TRELLMF--------LEKEVTGKDF--FGGKTIGFLDMIAGSMIPFCLARLWKGIGIDMI 179
Query: 178 DITKYPNLARLHDTYMEIPAFQAALPKNQ 206
K+P L R E+ A + +P +
Sbjct: 180 PEEKFPELNRWIKNLEEVEAVRGCIPPRE 208
>AT2G29480.1 | chr2:12630382-12631232 REVERSE LENGTH=226
Length = 225
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 83/208 (39%), Gaps = 18/208 (8%)
Query: 8 LYGAWISSCSHRIRIVLNLKGVDYEYKSVN-PRTDPDYEKINPI-KYIPALVDGDLVVSD 65
L G WIS S R+ + L LKGV YEY + P+ ++NP+ K +P LV D ++S+
Sbjct: 10 LLGFWISPFSRRVEMALKLKGVPYEYLEEDLPKKSTLLLELNPVHKKVPVLVHNDKLLSE 69
Query: 66 SLAIALYLEDKYPQHAXXXXXXXXXXXXXQIANIVCSSIQPLQGYAVIGLHEGKLSPDES 125
S I Y++ + + A V I P+ ++ +G
Sbjct: 70 SHVILEYIDQTWNNNPILPHDPYEKAMVRFWAKFVDEQILPVGFMPLVKAEKG------- 122
Query: 126 LQIVQHYIDKGFKAIEKLLEGSNFKYATGDEVQLGDVFLAPQIHAGINR----FQIDIT- 180
+ + I + +EK + G +F G + D+ I + R ID+T
Sbjct: 123 IDVAIEEIREMLMFLEKEVTGKDF--FGGKTIGFLDMVAGSMIPFCLARAWECLGIDMTP 180
Query: 181 --KYPNLARLHDTYMEIPAFQAALPKNQ 206
+P L R E+ + +P +
Sbjct: 181 EDTFPELNRWIKNLNEVEIVRECIPPKE 208
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,564,061
Number of extensions: 178815
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 9
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)