BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0197900 Os12g0197900|AK059540
         (137 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18420.2  | chr5:6105638-6109337 REVERSE LENGTH=443            219   4e-58

>AT5G18420.2 | chr5:6105638-6109337 REVERSE LENGTH=443
          Length = 442

 Score =  219 bits (558), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 123/139 (88%), Gaps = 2/139 (1%)

Query: 1   MTPQKLPDLVEHNPLIAVEILSKLMNSPDIDGYLDVLVHMEMSLHSMEVVNRLTTAVELP 60
           +TP+KLP LVEHNP IAVEIL+KL NS +I+ Y + L +M+MSLHSMEVVNRLTTAVELP
Sbjct: 303 ITPRKLPQLVEHNPQIAVEILTKLNNSTEINDYYEALGNMDMSLHSMEVVNRLTTAVELP 362

Query: 61  TEFVHEYISNCIQSCQNVK--DKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCI 118
            +F+  YI+NCI SC+N K  DKYMQNRLVRLVCVFLQSLIRNKIINV+DLFIEVQAFCI
Sbjct: 363 KDFIRMYITNCISSCENAKQQDKYMQNRLVRLVCVFLQSLIRNKIINVKDLFIEVQAFCI 422

Query: 119 EFSRIREAAGLFRLLKSLE 137
           EFSR+REAAGLFRLLK L+
Sbjct: 423 EFSRVREAAGLFRLLKQLD 441



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.139    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,628,787
Number of extensions: 90959
Number of successful extensions: 296
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 49
Effective length of database: 8,693,961
Effective search space: 426004089
Effective search space used: 426004089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 106 (45.4 bits)