BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0197500 Os12g0197500|AK064995
(609 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23570.1 | chr5:7943621-7945874 FORWARD LENGTH=626 435 e-122
AT3G22430.1 | chr3:7953455-7957605 FORWARD LENGTH=511 60 3e-09
AT4G01180.1 | chr4:501287-503394 REVERSE LENGTH=555 49 1e-05
>AT5G23570.1 | chr5:7943621-7945874 FORWARD LENGTH=626
Length = 625
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/510 (45%), Positives = 313/510 (61%), Gaps = 10/510 (1%)
Query: 91 NRSIEAELQAPHGVVTAPLANGWQWGARSCPPGTESKEGGLPLSGCDPETDNAEGYXXXX 150
+R + AP V PL GW W AR G+ + + DNA
Sbjct: 115 SRKYDNNFVAPPPVSRPPLEGGWNWQARG---GSAQHTAVQEFPDVEDDVDNASEEENDS 171
Query: 151 XXXXXXXXXXXXXXXXXXXXEKSFETRKNHKLFKGFFEVLEALSVEQLNEPTRQWHCPAC 210
+KS +RK +K FK FF L++LS+EQ+NEP RQWHCPAC
Sbjct: 172 DALDDSDDDLASDDYDSDVSQKSHGSRKQNKWFKKFFGSLDSLSIEQINEPQRQWHCPAC 231
Query: 211 KNGPGAIDWYKGLQPLMTHAKTKGSIKVKXXXXXXXXXXXXXXXXGTSVVPSGEQFRKWK 270
+NGPGAIDWY L PL+ HA+TKG+ +VK G SV+P GE + +WK
Sbjct: 232 QNGPGAIDWYN-LHPLLAHARTKGARRVKLHRELAEVLEKDLQMRGASVIPCGEIYGQWK 290
Query: 271 GLRES-TDREIVWPPMVVVMNTVLEQDEDDKWKGMGNQELIDYFSEYAASKARHAYGPNG 329
GL E D EIVWPPMV++MNT L++D++DKW GMGNQEL++YF +Y A +ARH+YGP G
Sbjct: 291 GLGEDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDKYEALRARHSYGPQG 350
Query: 330 HRGMSVLIFDSSAVGYMEAERLHDHFVRQRTDRNTWNSAHKVTFLPGGKRQLYGFLATKD 389
HRGMSVL+F+SSA GY+EAERLH DR W K + GG RQLYGFLATK
Sbjct: 351 HRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAW--GQKRSMFSGGVRQLYGFLATKQ 408
Query: 390 DMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDT 449
D++ FN+H GK+RLK+E++SY EMVV +++Q+SEDNQQLNY KNK+ K+ +H+K++E++
Sbjct: 409 DLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSKQNKHAKVLEES 468
Query: 450 LSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEK 509
L ++++KLR T E+N IVR + K +H + +EM + FF D I++IH+ + KE FE
Sbjct: 469 LEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEENFEM 528
Query: 510 LLQEERAKA---RQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDXXXXXXXXX 566
L Q+ERAK +Q +++ S +D R+R E++ +FI+ Q K++EEF ER+
Sbjct: 529 LQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEKK 588
Query: 567 XXXXXXXXXXXXFELEKELDTALTSLMDKH 596
F+LEKE D AL LM KH
Sbjct: 589 MEDMKKRHHEEIFDLEKEFDEALEQLMYKH 618
>AT3G22430.1 | chr3:7953455-7957605 FORWARD LENGTH=511
Length = 510
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 280 IVWPPMVVVMNTVLEQDEDDKWKGMGNQELIDYFSEYA--ASKARHAYGPNGHRGMSVLI 337
I+WPP V+V NT + ++ + +G GN+ + + E K++ YG GH G+++
Sbjct: 358 IIWPPHVIVQNTSTGKGKEGRMEGFGNKTMDNRIRELGLTGGKSKSLYGREGHLGITLFK 417
Query: 338 FDSSAVGYMEAERLHDHFVRQRTDRNTWNSAHKVTFL------PG----------GKRQL 381
F G +A R+ ++F + R +W +T PG KR
Sbjct: 418 FAGDDSGLRDAMRMAEYFEKINRGRKSWGRVQPLTPSKDDEKNPGLVEVDGRTGEKKRIF 477
Query: 382 YGFLATKDDME 392
YG+LAT D++
Sbjct: 478 YGYLATVTDLD 488
>AT4G01180.1 | chr4:501287-503394 REVERSE LENGTH=555
Length = 554
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 29/267 (10%)
Query: 281 VWPPMVVVMNTVLEQDEDDKWKGMGNQELIDYFSE--YAASKARHAYGPNGHRGMSVLIF 338
VWP + +V N E + + G L D F+ + ++ + + GH G +++ F
Sbjct: 33 VWPWVGLVANVPTEVEPSGRRVGKSGSTLRDEFTLKGFNPTRVKPIWNTKGHTGFALVEF 92
Query: 339 DSSAVGYMEAERLHDHFVRQRTDRNTWNSAHKVTFLPGGKRQLYGFLATKDDMETFNRH- 397
G+ A + F R + W H++ +LYG+LA +DD +NR
Sbjct: 93 AKDFKGFESAMQFEKSFDLDRHGKRDWKKGHRLR-----DDKLYGWLAREDD---YNRSD 144
Query: 398 CHGKS-RLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQK 456
GK+ + K +++S +++V ED ++L +L M + + +K + L QK
Sbjct: 145 TVGKNVKKKRDLKSISQIV-------EEDQRKLYHLFENMCQTIEKNKQRKQQLE---QK 194
Query: 457 LRETMEE----NTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEKLLQ 512
+ ET+E N ++ N +E E +K K +EF+ + K+ E E K EKL +
Sbjct: 195 VDETLESLEFHNLMLNNSYQE---EIQKMEKNMQEFYQQVLGGHEKSFAELEAKREKLDE 251
Query: 513 EERAKARQSDVDSGSTEDRRQRKEKIQ 539
R +++ + E R +E IQ
Sbjct: 252 RARLIEQRAIKNEEEMEKTRLEREMIQ 278
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,452,373
Number of extensions: 445426
Number of successful extensions: 2195
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2208
Number of HSP's successfully gapped: 4
Length of query: 609
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 505
Effective length of database: 8,255,305
Effective search space: 4168929025
Effective search space used: 4168929025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)