BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0194600 Os12g0194600|Os12g0194600
(150 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G58110.1 | chr1:21515919-21517374 REVERSE LENGTH=375 145 7e-36
AT2G42380.2 | chr2:17647205-17648660 REVERSE LENGTH=322 89 6e-19
AT3G58120.1 | chr3:21521289-21523078 REVERSE LENGTH=330 89 8e-19
AT1G35490.1 | chr1:13061856-13063166 FORWARD LENGTH=301 87 3e-18
AT4G06598.1 | chr4:3663945-3665395 FORWARD LENGTH=342 87 3e-18
AT5G04840.1 | chr5:1406005-1407648 FORWARD LENGTH=308 69 9e-13
AT1G06070.1 | chr1:1835201-1837116 REVERSE LENGTH=424 62 9e-11
AT1G43700.1 | chr1:16484352-16486017 FORWARD LENGTH=342 62 1e-10
AT2G40620.1 | chr2:16954804-16956872 REVERSE LENGTH=368 61 3e-10
AT2G31370.3 | chr2:13379448-13381072 FORWARD LENGTH=399 60 6e-10
AT4G38900.1 | chr4:18139564-18141520 REVERSE LENGTH=554 59 1e-09
AT1G06850.1 | chr1:2105233-2106518 FORWARD LENGTH=338 59 1e-09
AT2G21230.3 | chr2:9093920-9096059 REVERSE LENGTH=526 56 8e-09
>AT1G58110.1 | chr1:21515919-21517374 REVERSE LENGTH=375
Length = 374
Score = 145 bits (366), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 98/131 (74%), Gaps = 4/131 (3%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
+Q+AQRSRVRKLQYI+ELER VQ LQ EG +VSAE+DFL Q+N++L +ENKALK+RLES+
Sbjct: 240 QQFAQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQRNLILSMENKALKKRLESI 299
Query: 75 SQEHLIKRFQQEMFEREIGRLRSLFXXXXXXXXXXXXXGPTHSRSNSRDLDSQFANMSLK 134
+QE LIK+ +QE+ E+EIGRLR+L+ G R+ S+DLDSQF+++SL
Sbjct: 300 AQEKLIKQLEQEVLEKEIGRLRALYQQQQQTQKPSASRG----RATSKDLDSQFSSLSLN 355
Query: 135 HGDPNSGRDAV 145
D N RD+V
Sbjct: 356 TKDSNCRRDSV 366
>AT2G42380.2 | chr2:17647205-17648660 REVERSE LENGTH=322
Length = 321
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 61/85 (71%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ AQRSRVRKLQYI+ELER V +LQ E +S + FL Q ++L+++N ALKQR+ +L
Sbjct: 197 RQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAAL 256
Query: 75 SQEHLIKRFQQEMFEREIGRLRSLF 99
SQ+ L K QE +REI RLR ++
Sbjct: 257 SQDKLFKDAHQEALKREIERLRQVY 281
>AT3G58120.1 | chr3:21521289-21523078 REVERSE LENGTH=330
Length = 329
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 62/85 (72%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ AQRSRVRKLQYI+ELER V +LQTE +S + FL Q ++L+++N A+KQR+ +L
Sbjct: 213 RQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLDHQRLLLNVDNSAIKQRIAAL 272
Query: 75 SQEHLIKRFQQEMFEREIGRLRSLF 99
+Q+ + K QE +REI RLR ++
Sbjct: 273 AQDKIFKDAHQEALKREIERLRQVY 297
>AT1G35490.1 | chr1:13061856-13063166 FORWARD LENGTH=301
Length = 300
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 63/81 (77%)
Query: 16 QYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESLS 75
Q A R+R+R+L+YI++LER +Q LQ EG E+S+ + +L QQ +ML +EN+ALKQR++SL+
Sbjct: 178 QNAHRARLRRLEYISDLERTIQVLQVEGCEMSSAIHYLDQQLLMLSMENRALKQRMDSLA 237
Query: 76 QEHLIKRFQQEMFEREIGRLR 96
+ +K +Q++ EREIG L+
Sbjct: 238 EIQKLKHVEQQLLEREIGNLQ 258
>AT4G06598.1 | chr4:3663945-3665395 FORWARD LENGTH=342
Length = 341
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 69/124 (55%), Gaps = 28/124 (22%)
Query: 16 QYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESLS 75
Q+AQRSRVRK+QYIAELER VQ L ENK+LK RLESL+
Sbjct: 240 QFAQRSRVRKIQYIAELERNVQIL-----------------------ENKSLKNRLESLA 276
Query: 76 QEHLIKRFQQEMFEREIGRLRSLF-----XXXXXXXXXXXXXGPTHSRSNSRDLDSQFAN 130
QE LIK + ++ E+EI RLR+L+ +H RS SRDL++QF N
Sbjct: 277 QEQLIKYLEHDVLEKEIVRLRALYQLQQQQEPQQQHQTKKQGSSSHQRSKSRDLETQFTN 336
Query: 131 MSLK 134
+SL+
Sbjct: 337 LSLR 340
>AT5G04840.1 | chr5:1406005-1407648 FORWARD LENGTH=308
Length = 307
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 52/83 (62%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
R QRSRVRKLQYIAELER V LQT ++S + L Q L LEN LKQ++ L
Sbjct: 179 RNPGQRSRVRKLQYIAELERTVGMLQTVEADLSVRVASLLQTRATLSLENSQLKQQMAIL 238
Query: 75 SQEHLIKRFQQEMFEREIGRLRS 97
Q+ LI+ + ++ ++E RL+S
Sbjct: 239 KQDKLIREGEYQLLKKEAQRLKS 261
>AT1G06070.1 | chr1:1835201-1837116 REVERSE LENGTH=424
Length = 423
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ A RS+ RK++YIAELER+VQ LQTE +SA++ L + L +EN LK R++++
Sbjct: 221 RQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLGVENNELKLRVQTM 280
Query: 75 SQEHLIKRFQQEMFEREIGRLRSL 98
Q+ ++ + + E+ L+ L
Sbjct: 281 EQQVHLQDALNDALKEEVQHLKVL 304
>AT1G43700.1 | chr1:16484352-16486017 FORWARD LENGTH=342
Length = 341
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ A RS+ RK++Y ELER+VQ LQ E +SA++ L + L+ ENK LK RL++L
Sbjct: 205 RQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGTSELNTENKHLKMRLQAL 264
Query: 75 SQEHLIKRFQQEMFEREIGRLR 96
Q+ ++ E E+ RL+
Sbjct: 265 EQQAELRDALNEALRDELNRLK 286
>AT2G40620.1 | chr2:16954804-16956872 REVERSE LENGTH=368
Length = 367
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ A RS+ RK +YI ELER+VQ LQTE +SA++ + L EN LK RL+ +
Sbjct: 159 RQSAARSKERKARYILELERKVQTLQTEATTLSAQLSLFQRDTTGLSSENTELKLRLQVM 218
Query: 75 SQEHLIKRFQQEMFEREIGRLR 96
Q+ ++ E ++E+ RL+
Sbjct: 219 EQQAKLRDALNEQLKKEVERLK 240
>AT2G31370.3 | chr2:13379448-13381072 FORWARD LENGTH=399
Length = 398
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ A RS+ RK +YI ELER+VQ LQTE +SA++ L + L +EN LK RL+++
Sbjct: 212 RQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTM 271
Query: 75 SQEHLIKRFQQEMFEREIGRLRSL 98
Q+ ++ E + EI L+ L
Sbjct: 272 EQQVHLQDELNEALKEEIQHLKVL 295
>AT4G38900.1 | chr4:18139564-18141520 REVERSE LENGTH=554
Length = 553
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ A RS+ RK++YI ELE +VQ LQTE +SA++ L + + L +N LK RL+++
Sbjct: 411 RQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGLTNQNNELKFRLQAM 470
Query: 75 SQEHLIKRFQQEMFEREIGRLR 96
Q+ ++ E E+ RL+
Sbjct: 471 EQQARLRDALNEALNGEVQRLK 492
>AT1G06850.1 | chr1:2105233-2106518 FORWARD LENGTH=338
Length = 337
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ A RS+ RK +YI ELER+VQ+LQTE +SA++ + L EN LK RL+++
Sbjct: 159 RQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLYQRDTNGLANENTELKLRLQAM 218
Query: 75 SQEHLIKRFQQEMFEREIGRLR 96
Q+ ++ E +E+ R++
Sbjct: 219 EQQAQLRNALNEALRKEVERMK 240
>AT2G21230.3 | chr2:9093920-9096059 REVERSE LENGTH=526
Length = 525
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
R A RS+ RK +Y+AELE +VQ LQTE +SA++ L + ++ L +N LK RL+++
Sbjct: 381 RVSAARSKERKTRYMAELEHKVQTLQTEATTLSAQLTHLQRDSMGLTNQNSELKFRLQAM 440
Query: 75 SQE-------HLIKRFQQEMFEREIGRLR 96
Q+ H+IK +++ E E+ RL+
Sbjct: 441 EQQAQLRDGMHIIKTLSEKLNE-EVQRLK 468
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,487,967
Number of extensions: 72556
Number of successful extensions: 371
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 13
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)