BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0183100 Os12g0183100|AK060732
(486 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09300.1 | chr5:2884282-2886797 REVERSE LENGTH=473 637 0.0
AT1G21400.1 | chr1:7493492-7496240 FORWARD LENGTH=473 634 0.0
AT5G34780.1 | chr5:12961682-12963892 REVERSE LENGTH=366 309 2e-84
AT1G24180.1 | chr1:8560777-8563382 REVERSE LENGTH=394 166 2e-41
AT1G59900.1 | chr1:22051368-22053660 FORWARD LENGTH=390 166 3e-41
AT1G01090.1 | chr1:47705-49166 REVERSE LENGTH=429 124 1e-28
>AT5G09300.1 | chr5:2884282-2886797 REVERSE LENGTH=473
Length = 472
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 288/393 (73%), Positives = 347/393 (88%)
Query: 92 QAIDFPGGKVSFVAEMNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEM 151
Q +DFPGGKV+F E+ F+ ES ++R+ CYRVLDD+G+ I+ S+F +VS+E+A+K+Y++M
Sbjct: 78 QVMDFPGGKVAFTPEIQFISESDKERVPCYRVLDDNGQLITNSQFVQVSEEVAVKIYSDM 137
Query: 152 ATLQVMDTIFFEAQRQGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGF 211
TLQ+MD IF+EAQRQGR+SFY T+ GEEAINIASAAALT D++ PQYREPGVLLWRGF
Sbjct: 138 VTLQIMDNIFYEAQRQGRLSFYATAIGEEAINIASAAALTPQDVIFPQYREPGVLLWRGF 197
Query: 212 TLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKD 271
TLQEFANQCFGNK DYGKGRQMP+HYGSN+LNYFTVS+ IATQLP+AVGAAYSLKMDKKD
Sbjct: 198 TLQEFANQCFGNKSDYGKGRQMPVHYGSNKLNYFTVSATIATQLPNAVGAAYSLKMDKKD 257
Query: 272 ACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQFRSDGAVIRGQ 331
ACA+TYFGDGGTSEGDFHAALN AAVMEAPV+F CRNNGWAISTPTS+QFRSDG V++G+
Sbjct: 258 ACAVTYFGDGGTSEGDFHAALNIAAVMEAPVLFICRNNGWAISTPTSDQFRSDGVVVKGR 317
Query: 332 AYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEALTYRVGHHSTSDDSTKYRPVD 391
AYG+RSIRVDGNDALA+YSAVHTAREMAI+E RPIL+EALTYRVGHHSTSDDST+YR
Sbjct: 318 AYGIRSIRVDGNDALAMYSAVHTAREMAIREQRPILIEALTYRVGHHSTSDDSTRYRSAG 377
Query: 392 EIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPLAELF 451
EIE W AR+P+SR+R W++ NGWW D+ ES+LR+ +++E+L+A++VAE+ KP L +F
Sbjct: 378 EIEWWNKARNPLSRFRTWIESNGWWSDKTESDLRSRIKKEMLEALRVAEKTEKPNLQNMF 437
Query: 452 TDVYDEVPSNLREQERLLRDTIKKHPADYPADV 484
+DVYD PSNLREQE L+R TI HP DYP+DV
Sbjct: 438 SDVYDVPPSNLREQELLVRQTINSHPQDYPSDV 470
>AT1G21400.1 | chr1:7493492-7496240 FORWARD LENGTH=473
Length = 472
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 290/395 (73%), Positives = 337/395 (85%)
Query: 92 QAIDFPGGKVSFVAEMNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEM 151
Q +DFPGGKV + +EM F+PES RI CYRVLD+DGR I S F VS++LA++MY +M
Sbjct: 78 QELDFPGGKVGYTSEMKFIPESSSRRIPCYRVLDEDGRIIPDSDFIPVSEKLAVRMYEQM 137
Query: 152 ATLQVMDTIFFEAQRQGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGF 211
ATLQVMD IF+EAQRQGRISFYLTS GEEAINIASAAAL+ DD+VLPQYREPGVLLWRGF
Sbjct: 138 ATLQVMDHIFYEAQRQGRISFYLTSVGEEAINIASAAALSPDDVVLPQYREPGVLLWRGF 197
Query: 212 TLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKD 271
TL+EFANQCFGNK DYGKGRQMPIHYGSNRLNYFT+SSPIATQLP A G YSLKMDKK+
Sbjct: 198 TLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPIATQLPQAAGVGYSLKMDKKN 257
Query: 272 ACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQFRSDGAVIRGQ 331
AC +T+ GDGGTSEGDFHA LNFAAVMEAPV+F CRNNGWAIST SEQFRSDG V++GQ
Sbjct: 258 ACTVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWAISTHISEQFRSDGIVVKGQ 317
Query: 332 AYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEALTYRVGHHSTSDDSTKYRPVD 391
AYG+RSIRVDGNDALAVYSAV +AREMA+ E RP+L+E +TYRVGHHSTSDDSTKYR D
Sbjct: 318 AYGIRSIRVDGNDALAVYSAVRSAREMAVTEQRPVLIEMMTYRVGHHSTSDDSTKYRAAD 377
Query: 392 EIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPLAELF 451
EI++W+ +R+P++R+RKWV+ NGWW +EDES+LR+N R++LL+AIQ AE+ K PL ELF
Sbjct: 378 EIQYWKMSRNPVNRFRKWVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTELF 437
Query: 452 TDVYDEVPSNLREQERLLRDTIKKHPADYPADVHI 486
DVYD P NL EQE L++ +KK P DYP H+
Sbjct: 438 NDVYDVKPKNLEEQELGLKELVKKQPQDYPPGFHV 472
>AT5G34780.1 | chr5:12961682-12963892 REVERSE LENGTH=366
Length = 365
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 145/212 (68%), Positives = 178/212 (83%)
Query: 269 KKDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQFRSDGAVI 328
+K+ACA+T+ GDGGTSEGDFHA LNFAAVMEAPV+F CRNNGWAIST SEQFRSDG V+
Sbjct: 25 EKNACAVTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWAISTHISEQFRSDGIVV 84
Query: 329 RGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEALTYRVGHHSTSDDSTKYR 388
+GQAYG+RSIRVDGNDALAVYSAV +AREMA+ E RP+L+E + YRVGHHSTSDDSTKYR
Sbjct: 85 KGQAYGIRSIRVDGNDALAVYSAVCSAREMAVTEQRPVLIEMMIYRVGHHSTSDDSTKYR 144
Query: 389 PVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPLA 448
DEI++W+ +R+ ++R+RK V+ NGWW +EDES+LR+N R++LL+AIQ AE+ K PL
Sbjct: 145 AADEIQYWKMSRNSVNRFRKSVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLT 204
Query: 449 ELFTDVYDEVPSNLREQERLLRDTIKKHPADY 480
ELF DVYD P NL E+E L++ I+K P DY
Sbjct: 205 ELFNDVYDVKPKNLEEEELGLKELIEKQPQDY 236
>AT1G24180.1 | chr1:8560777-8563382 REVERSE LENGTH=394
Length = 393
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 165/328 (50%), Gaps = 10/328 (3%)
Query: 132 SGSRFQEVSKELALKMYNEMATLQVM----DTIFFEAQRQGRISFYLTSHGEEAINIASA 187
S SR E S E L + +MA ++ M D+++ +G Y G+EA+ +
Sbjct: 51 SPSRSVETSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLY---DGQEALAVGME 107
Query: 188 AALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTV 247
AA+T D ++ YR+ + RG L + ++ G K G+ +H+ +++
Sbjct: 108 AAITKKDAIITSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGG 167
Query: 248 SSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCR 307
+ Q+P G A++ K +K +A +GDG ++G ALN +A+ + P I C
Sbjct: 168 HGIVGAQIPLGCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCE 227
Query: 308 NNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPIL 367
NN + + T T +S RG + ++VDG DALAV A A+E A+K G PI+
Sbjct: 228 NNHYGMGTATWRSAKSPAYFKRGDY--VPGLKVDGMDALAVKQACKFAKEHALKNG-PII 284
Query: 368 VEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNN 427
+E TYR HS SD + YR DEI R RDPI R RK + + +++ ++
Sbjct: 285 LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELKDMEKE 344
Query: 428 VRQELLKAIQVAERMPKPPLAELFTDVY 455
+R+E+ A+ A+ P P +ELFT++Y
Sbjct: 345 IRKEVDDAVAQAKESPIPDASELFTNMY 372
>AT1G59900.1 | chr1:22051368-22053660 FORWARD LENGTH=390
Length = 389
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 166/326 (50%), Gaps = 10/326 (3%)
Query: 134 SRFQEVSKELALKMYNEMATLQVM----DTIFFEAQRQGRISFYLTSHGEEAINIASAAA 189
SR E S + L + MA ++ M D+++ +G Y G+EA+ I AA
Sbjct: 49 SRSVESSSQELLDFFRTMALMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAIGMEAA 105
Query: 190 LTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSS 249
+T D ++ YR+ + L RG +L E ++ G + KG+ +H+ +++
Sbjct: 106 ITKKDAIITAYRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHG 165
Query: 250 PIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNN 309
+ Q+P G A++ K +K++A +GDG ++G ALN +A+ + P I C NN
Sbjct: 166 IVGAQVPLGCGIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENN 225
Query: 310 GWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVE 369
+ + T +S RG + ++VDG DA AV A A++ A+++G PI++E
Sbjct: 226 HYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDAFAVKQACKFAKQHALEKG-PIILE 282
Query: 370 ALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVR 429
TYR HS SD + YR DEI R RDPI R +K V + +++ ++ +R
Sbjct: 283 MDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEIR 342
Query: 430 QELLKAIQVAERMPKPPLAELFTDVY 455
+E+ AI A+ P P +ELFT+VY
Sbjct: 343 KEVDDAIAKAKDCPMPEPSELFTNVY 368
>AT1G01090.1 | chr1:47705-49166 REVERSE LENGTH=429
Length = 428
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 156/325 (48%), Gaps = 11/325 (3%)
Query: 139 VSKELALKMYNEMATLQVMDTIFFEAQRQGRI-SFYLTSHGEEAINIASAAALTIDDIVL 197
++KE L++Y +M + + + + +G++ F +G+EA++ LT D V+
Sbjct: 79 ITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVV 138
Query: 198 PQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPH 257
YR+ L +G + + ++ FG +G+ +H S N + I +P
Sbjct: 139 STYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPV 198
Query: 258 AVGAAYSLKMDKK------DACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGW 311
A GAA+S K ++ D + +FGDG + G F LN AA+ + P+IF NN W
Sbjct: 199 ATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVENNLW 258
Query: 312 AISTPTSEQFRSDGAV-IRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEA 370
AI + + SD + +G A+GM + VDG D L V A A + P LVE
Sbjct: 259 AIGM-SHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPTLVEC 317
Query: 371 LTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQ 430
TYR HS +D ++ ++ ARDPI+ +K++ N + + + + +
Sbjct: 318 ETYRFRGHSLADPDELRDAAEKAKY--AARDPIAALKKYLIENKLAKEAELKSIEKKIDE 375
Query: 431 ELLKAIQVAERMPKPPLAELFTDVY 455
+ +A++ A+ P+P ++L +V+
Sbjct: 376 LVEEAVEFADASPQPGRSQLLENVF 400
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,301,219
Number of extensions: 386767
Number of successful extensions: 858
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 6
Length of query: 486
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 384
Effective length of database: 8,310,137
Effective search space: 3191092608
Effective search space used: 3191092608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)