BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0177900 Os12g0177900|J065196B09
(207 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G44170.1 | chr1:16796564-16800031 REVERSE LENGTH=485 278 1e-75
AT4G34240.1 | chr4:16389801-16392633 FORWARD LENGTH=551 228 1e-60
AT4G36250.1 | chr4:17151029-17153381 FORWARD LENGTH=485 205 1e-53
AT3G48170.1 | chr3:17786290-17789918 REVERSE LENGTH=504 63 1e-10
AT1G74920.1 | chr1:28139175-28142573 REVERSE LENGTH=502 62 2e-10
AT1G79440.1 | chr1:29882525-29887275 REVERSE LENGTH=529 54 6e-08
AT3G66658.2 | chr3:2095341-2099013 REVERSE LENGTH=597 51 4e-07
AT1G23800.1 | chr1:8412238-8414804 REVERSE LENGTH=535 49 2e-06
AT3G48000.1 | chr3:17717082-17719843 REVERSE LENGTH=539 48 4e-06
>AT1G44170.1 | chr1:16796564-16800031 REVERSE LENGTH=485
Length = 484
Score = 278 bits (711), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 126/201 (62%), Positives = 159/201 (79%)
Query: 7 VLSIDPXXXXXXXXNAVVLKPSEVAPATSSLLAELLPRYVDGSCIKVVEGGVAETTTLLE 66
+LSIDP NAVVLKPSE+APA+S+LL +LL +Y+D S ++VVEG V ET+ LLE
Sbjct: 127 LLSIDPVIGAISAGNAVVLKPSELAPASSALLTKLLEQYLDPSAVRVVEGAVTETSALLE 186
Query: 67 QKWDKIFYTGNGKVGRIVMASAAKHLTPVVLELGGKCPVVVDSNVNLHVTAKRIAAGKWG 126
QKWDKIFYTG+ K+GR++MA+AAKHLTPVVLELGGK PVVVDS+ +L VT +RI GKWG
Sbjct: 187 QKWDKIFYTGSSKIGRVIMAAAAKHLTPVVLELGGKSPVVVDSDTDLKVTVRRIIVGKWG 246
Query: 127 CNNGQACISPDFIITTKSFAPXXXXXXXXXXXXFYGRDPLRSSDLSRIVNSNHFNRLKKL 186
CNNGQAC+SPD+I+TTK +AP FYG++P+ S D+SRIVNSNHF+RL KL
Sbjct: 247 CNNGQACVSPDYILTTKEYAPKLIDAMKLELEKFYGKNPIESKDMSRIVNSNHFDRLSKL 306
Query: 187 MDDENVSDKIVFGGQRDEHQL 207
+D++ VSDKIV+GG++D L
Sbjct: 307 LDEKEVSDKIVYGGEKDRENL 327
>AT4G34240.1 | chr4:16389801-16392633 FORWARD LENGTH=551
Length = 550
Score = 228 bits (581), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 148/201 (73%)
Query: 7 VLSIDPXXXXXXXXNAVVLKPSEVAPATSSLLAELLPRYVDGSCIKVVEGGVAETTTLLE 66
+LS++P NAVVLKPSE+APA SSLLA+L Y+D + I+V+EGGV ETT LL+
Sbjct: 190 LLSVEPVIGAIAAGNAVVLKPSEIAPAASSLLAKLFSEYLDNTTIRVIEGGVPETTALLD 249
Query: 67 QKWDKIFYTGNGKVGRIVMASAAKHLTPVVLELGGKCPVVVDSNVNLHVTAKRIAAGKWG 126
QKWDKIF+TG +V RI+MA+AA++LTPVVLELGGKCP +VDS+VNL V A+RI AGKW
Sbjct: 250 QKWDKIFFTGGARVARIIMAAAARNLTPVVLELGGKCPALVDSDVNLQVAARRIIAGKWA 309
Query: 127 CNNGQACISPDFIITTKSFAPXXXXXXXXXXXXFYGRDPLRSSDLSRIVNSNHFNRLKKL 186
CN+GQACI D++ITTK FA F+G++ L S DLSRIVNS HF RL+ +
Sbjct: 310 CNSGQACIGVDYVITTKDFASKLIDALKTELETFFGQNALESKDLSRIVNSFHFKRLESM 369
Query: 187 MDDENVSDKIVFGGQRDEHQL 207
+ + V++KIV GG+ E +L
Sbjct: 370 LKENGVANKIVHGGRITEDKL 390
>AT4G36250.1 | chr4:17151029-17153381 FORWARD LENGTH=485
Length = 484
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 130/203 (64%), Gaps = 3/203 (1%)
Query: 8 LSIDPXXXXXXXXNAVVLKPSEVAPATSSLLAELLPRYVDGSCIKVVEGGVAETTTLLEQ 67
LS+DP N V+LK SE++P S+ LA+ +P Y+D IKV+EGG T LL+
Sbjct: 124 LSLDPLIGAIAAGNTVLLKSSELSPNASAFLAKTIPAYLDTKAIKVIEGGPDVATILLQH 183
Query: 68 KWDKIFYTGNGKVGRIVMASAAKHLTPVVLELGGKCPVVVDSNV---NLHVTAKRIAAGK 124
+WDKIF+TG+ K+GRI+MA+AA+HLTPV LELGGKCP +VD + N+ KRIA GK
Sbjct: 184 QWDKIFFTGSPKIGRIIMAAAAQHLTPVTLELGGKCPTIVDHHTISKNIKSVVKRIAGGK 243
Query: 125 WGCNNGQACISPDFIITTKSFAPXXXXXXXXXXXXFYGRDPLRSSDLSRIVNSNHFNRLK 184
WG NGQACIS D+++ KSFAP F+G +P S LSRI N +H RL
Sbjct: 244 WGSCNGQACISVDYVLIEKSFAPTLIDMLKPTIKSFFGENPKESGCLSRIANKHHVQRLS 303
Query: 185 KLMDDENVSDKIVFGGQRDEHQL 207
+L+ D V IV+GG DE +L
Sbjct: 304 RLLSDPRVQASIVYGGSIDEDKL 326
>AT3G48170.1 | chr3:17786290-17789918 REVERSE LENGTH=504
Length = 503
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 18/193 (9%)
Query: 24 VLKPSEVAPATSSLLAEL-----LPRYVDGSCIKVVEGGVAETTTLLEQK--WDKIFYTG 76
+LKPSE+A T LA++ LP V + ++ G E L DKI +TG
Sbjct: 183 ILKPSELASLTCLELADICREVGLPPGV----LNILTGLGTEAGAPLASHPHVDKIVFTG 238
Query: 77 NGKVGRIVMASAAKHLTPVVLELGGKCPVVVDSNVNLHVTAKRIAAGKWGC--NNGQACI 134
+ G +M SAAK + PV LELGGK P++V +V++ K + +GC NGQ C
Sbjct: 239 STTTGSSIMTSAAKLVKPVSLELGGKSPIIVFDDVDID---KAVEWTMFGCFWTNGQICS 295
Query: 135 SPDFIITTKSFAPXXXXXXXXXXXXFYGRDPLRSS-DLSRIVNSNHFNRLKKLMDD-ENV 192
+ ++ + A DP L +V+ + R+ K + + N
Sbjct: 296 ATSRLLVHERIADEFLDKLVKWTKNIKISDPFEEGCRLGPVVSKGQYERVLKFVSNARNE 355
Query: 193 SDKIVFGGQRDEH 205
++ GG R EH
Sbjct: 356 GATVLCGGVRPEH 368
>AT1G74920.1 | chr1:28139175-28142573 REVERSE LENGTH=502
Length = 501
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 18/193 (9%)
Query: 24 VLKPSEVAPATSSLLAEL-----LPRYVDGSCIKVVEGGVAETTTLLEQK--WDKIFYTG 76
+LKPSE+A T LA++ LP V + V+ G +E L DKI +TG
Sbjct: 183 ILKPSELASVTCLELADICREVGLPPGV----LNVLTGFGSEAGAPLASHPGVDKIAFTG 238
Query: 77 NGKVGRIVMASAAKHLTPVVLELGGKCPVVVDSNVNLHVTAKRIAAGKWGC--NNGQACI 134
+ G VM +AA+ + PV +ELGGK P++V +V+L A+ +GC NGQ C
Sbjct: 239 SFATGSKVMTAAAQLVKPVSMELGGKSPLIVFDDVDLDKAAEW---ALFGCFWTNGQICS 295
Query: 135 SPDFIITTKSFAPXXXXXXXXXXXXFYGRDPLRSS-DLSRIVNSNHFNRLKKLMDD-ENV 192
+ ++ +S A DP+ L +V+ + ++ K + ++
Sbjct: 296 ATSRLLVHESIASEFIEKLVKWSKNIKISDPMEEGCRLGPVVSKGQYEKILKFISTAKSE 355
Query: 193 SDKIVFGGQRDEH 205
I+ GG R EH
Sbjct: 356 GATILHGGSRPEH 368
>AT1G79440.1 | chr1:29882525-29887275 REVERSE LENGTH=529
Length = 528
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 6/185 (3%)
Query: 23 VVLKPSEVAPATSSLLAELLPRY-VDGSCIKVVEGGVAET--TTLLEQKWDKIFYTGNGK 79
VV+KPSE+ P T+ AEL + V + VV G E L + KI +TG+
Sbjct: 219 VVVKPSELTPLTALAAAELALQAGVPPGALNVVMGNAPEIGDALLTSPQVRKITFTGSTA 278
Query: 80 VGRIVMASAAKHLTPVVLELGGKCPVVVDSNVNLHVTAKRIAAGKWGCNNGQACISPDFI 139
VG+ +MA+AA + V LELGG P +V + +L V K A K+ N+GQ C+ + +
Sbjct: 279 VGKKLMAAAAPTVKKVSLELGGNAPSIVFDDADLDVAVKGTLAAKF-RNSGQTCVCANRV 337
Query: 140 ITTKSFAPXXXXXXXXXXXXFYGRDPLR-SSDLSRIVNSNHFNRLKKLMDDE-NVSDKIV 197
+ D R + ++N +++ + D + KI+
Sbjct: 338 LVQDGIYDKFAEAFSEAVQKLEVGDGFRDGTTQGPLINDAAVQKVETFVQDAVSKGAKII 397
Query: 198 FGGQR 202
GG+R
Sbjct: 398 IGGKR 402
>AT3G66658.2 | chr3:2095341-2099013 REVERSE LENGTH=597
Length = 596
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 57 GVAETTTLLEQKWDKIFYTGNGKVGRIVMASAAKHLTPVVLELGGKCPVVVDSNVNLHVT 116
G AET L DK+ + G+ VG+++M +AA+ LTPV LELGGK ++ + ++
Sbjct: 257 GFAETGEALVSSVDKMIFVGSTAVGKMIMRNAAETLTPVTLELGGKDAFIICEDADVSHV 316
Query: 117 AKRIAAGKWGCNNGQACISPDFIITTKSFAPXXXXXXXXXXXXFYGRDPLRSS-DLSRIV 175
A+ G ++GQ C + K PL D+ I
Sbjct: 317 AQVAVRGTLQ-SSGQNCAGAERFYVHKDIYTAFIGQVTKIVKSVSAGPPLTGRYDMGAIC 375
Query: 176 NSNHFNRLKKLMDD 189
H L+ L++D
Sbjct: 376 LQEHSEHLQSLVND 389
>AT1G23800.1 | chr1:8412238-8414804 REVERSE LENGTH=535
Length = 534
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 21 NAVVLKPSEVAPATSSLLAELLPRY-VDGSCIKVVEG--GVAETTTLLEQKWDKIFYTGN 77
N VVLK +E P ++ L+ +LL + + +V G A DK+ +TG+
Sbjct: 220 NTVVLKTAEQTPLSALLVGKLLHEAGLPDGVVNIVSGFGATAGAAIASHMDVDKVAFTGS 279
Query: 78 GKVGRIVMASAAK-HLTPVVLELGGKCPVVV--DSNVNLHVTAKRIAAGKWGCNNGQAC 133
VG+I++ A+K +L V LELGGK P +V D++V+ V A N GQ C
Sbjct: 280 TDVGKIILELASKSNLKAVTLELGGKSPFIVCEDADVDQAVELAHFAL---FFNQGQCC 335
>AT3G48000.1 | chr3:17717082-17719843 REVERSE LENGTH=539
Length = 538
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 21 NAVVLKPSEVAPATSSLLAEL-LPRYVDGSCIKVVEGGVAETTTLLEQKWD--KIFYTGN 77
N +VLK +E P T+ +L L + + +V G A L D K+ +TG+
Sbjct: 224 NTIVLKTAEQTPLTAFYAGKLFLEAGLPPGVLNIVSGFGATAGAALASHMDVDKLAFTGS 283
Query: 78 GKVGRIVMASAAK-HLTPVVLELGGKCPVVVDSNVNLHVTAKRIAAGKWGCNNGQAC 133
G++++ AA +L PV LELGGK P +V + ++ A +A N GQ C
Sbjct: 284 TDTGKVILGLAANSNLKPVTLELGGKSPFIVFEDADID-KAVELAHFALFFNQGQCC 339
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,060,499
Number of extensions: 149603
Number of successful extensions: 355
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 10
Length of query: 207
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 113
Effective length of database: 8,529,465
Effective search space: 963829545
Effective search space used: 963829545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)