BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0175500 Os12g0175500|AK060940
(285 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38270.1 | chr2:16031347-16033054 REVERSE LENGTH=294 323 9e-89
AT3G54900.1 | chr3:20341850-20342371 REVERSE LENGTH=174 104 7e-23
AT4G04950.1 | chr4:2517882-2519924 REVERSE LENGTH=489 100 7e-22
AT3G15660.1 | chr3:5308134-5309383 REVERSE LENGTH=170 92 5e-19
AT5G40370.2 | chr5:16147826-16148900 REVERSE LENGTH=137 48 7e-06
>AT2G38270.1 | chr2:16031347-16033054 REVERSE LENGTH=294
Length = 293
Score = 323 bits (827), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 153/221 (69%), Positives = 182/221 (82%), Gaps = 4/221 (1%)
Query: 65 PLPDEEALPPKPGVYGVYDPAGELQFVGISRNVRASVEGHRRKVPADLCGSVKVSIADEE 124
P+ + +++P GVY VYD + ELQFVGISRN+ ASV H + VP +LCGSVKV I +E
Sbjct: 76 PITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVP-ELCGSVKVGIVEE- 133
Query: 125 TPDRTVLTNAWKSWLEEHITATGKAPPGNVAGNHTWVG-PPQRPPDLRLTPGRHVQLTVP 183
PD+ VLT AWK W+EEHI TGK PPGN +GN+T+V P++ D+RLTPGRHV+LTVP
Sbjct: 134 -PDKAVLTQAWKLWIEEHIKVTGKVPPGNKSGNNTFVKQTPRKKSDIRLTPGRHVELTVP 192
Query: 184 LEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRE 243
LE+LIDRLVK++KVVAFIKGSRSAPQCGFSQRVVGILES GVD+ TVDVLD+E+NHGLRE
Sbjct: 193 LEELIDRLVKESKVVAFIKGSRSAPQCGFSQRVVGILESQGVDYETVDVLDDEYNHGLRE 252
Query: 244 TLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGELAALFK 284
TLK YSNWPTFPQ+FV GELVGGCDI++SM E GELA +
Sbjct: 253 TLKNYSNWPTFPQIFVKGELVGGCDILTSMYENGELANILN 293
>AT3G54900.1 | chr3:20341850-20342371 REVERSE LENGTH=174
Length = 173
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 72/115 (62%), Gaps = 7/115 (6%)
Query: 169 DLRLTPGRH----VQLTVPLEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHG 224
+L+L P + LT L+ +++LV KVV F+KG+R P CGFS VV IL++
Sbjct: 52 NLKLKPTKFRCSASALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLN 111
Query: 225 VDFVTVDVLDEEHNHGLRETLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGEL 279
V F V++L+ N LR+ LK YSNWPTFPQ+++GGE GGCDI + GEL
Sbjct: 112 VPFEDVNILE---NEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGEL 163
>AT4G04950.1 | chr4:2517882-2519924 REVERSE LENGTH=489
Length = 488
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 12/169 (7%)
Query: 114 GSVKVSIADEETPDRTVLTNAWKSWLEEHITATGKAPPGNVAGNHTWVGPPQRPPDLR-L 172
GS + + DE V +N W S+ + ++ G + G V Q+ +L+ +
Sbjct: 327 GSFDILLDDEVRQGLKVYSN-WSSYPQLYV-------KGELMGGSDIVLEMQKSGELKKV 378
Query: 173 TPGRHVQLTVPLEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDV 232
+ + LE + L+ ++V+ F+KGS P+CGFS +VV L V F + D+
Sbjct: 379 LTEKGITGEQSLEDRLKALINSSEVMLFMKGSPDEPKCGFSSKVVKALRGENVSFGSFDI 438
Query: 233 LDEEHNHGLRETLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGELAA 281
L +E +R+ +K +SNWPTFPQ++ GEL+GGCDI+ ++E G+L A
Sbjct: 439 LTDEE---VRQGIKNFSNWPTFPQLYYKGELIGGCDIIMELSESGDLKA 484
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 23/152 (15%)
Query: 152 GNVAGNHTWVGPPQRPPDLRLTPGRHVQLTV-------------------PLEQLIDRLV 192
G VAG+ T P P L L G + TV L+ +++L
Sbjct: 103 GKVAGSST-SAEPAAPASLGLAAGPTILETVKENAKASLQDRAQPVSTADALKSRLEKLT 161
Query: 193 KDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRETLKTYSNWP 252
+ V+ F+KG P+CGFS++VV IL+ VDF + D+L + +RE LK +SNWP
Sbjct: 162 NSHPVMLFMKGIPEEPRCGFSRKVVDILKEVNVDFGSFDILSDNE---VREGLKKFSNWP 218
Query: 253 TFPQVFVGGELVGGCDIVSSMAEKGELAALFK 284
TFPQ++ GEL+GG DI +M E GEL FK
Sbjct: 219 TFPQLYCNGELLGGADIAIAMHESGELKDAFK 250
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Query: 180 LTVPLEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNH 239
L+ L ++ LV V+ F+KG P+CGFS +VV IL ++F + D+L ++
Sbjct: 279 LSETLRARLEGLVNSKPVMLFMKGRPEEPKCGFSGKVVEILNQEKIEFGSFDILLDDE-- 336
Query: 240 GLRETLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGEL 279
+R+ LK YSNW ++PQ++V GEL+GG DIV M + GEL
Sbjct: 337 -VRQGLKVYSNWSSYPQLYVKGELMGGSDIVLEMQKSGEL 375
>AT3G15660.1 | chr3:5308134-5309383 REVERSE LENGTH=170
Length = 169
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 181 TVPLEQLIDRLVKDNKVVAFIKGSRSAPQCGFSQRVVGILESHGVDFVTVDVLDEEHNHG 240
T L+ +++ VKDN V+ ++KG +PQCGFS V +L+ + V + ++L+++
Sbjct: 62 TDSLKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPISSRNILEDQE--- 118
Query: 241 LRETLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGELAALFK 284
L+ +K++S+WPTFPQ+F+ GE +GG DI+ +M ++GEL K
Sbjct: 119 LKNAVKSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKLK 162
>AT5G40370.2 | chr5:16147826-16148900 REVERSE LENGTH=137
Length = 136
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 188 IDRLVKDNKVVAFIKGSRSA----PQCGFSQRVVGILESHGVDFVTVDVLDEEHNHGLRE 243
+D V +++++ G+ S C + RV +L+ G F V++ E ++
Sbjct: 22 LDAFVYQWMILSYLIGNFSGICSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQS 81
Query: 244 TLKTYSNWPTFPQVFVGGELVGGCDIVSSMAEKGELAALF 283
L ++ T P VF+GG +GGCD S++ + G+L L
Sbjct: 82 GLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLL 121
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,177,482
Number of extensions: 278232
Number of successful extensions: 904
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 7
Length of query: 285
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 188
Effective length of database: 8,447,217
Effective search space: 1588076796
Effective search space used: 1588076796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)