BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0172500 Os12g0172500|AK101515
(563 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53390.1 | chr3:19792781-19796428 FORWARD LENGTH=559 684 0.0
AT2G37160.2 | chr2:15609047-15612529 FORWARD LENGTH=574 662 0.0
AT5G52820.1 | chr5:21401423-21404203 FORWARD LENGTH=474 60 5e-09
AT2G43770.1 | chr2:18134272-18135303 REVERSE LENGTH=344 56 5e-08
AT5G23430.1 | chr5:7894073-7899862 REVERSE LENGTH=838 51 2e-06
AT1G11160.1 | chr1:3733406-3739363 FORWARD LENGTH=1022 51 2e-06
AT2G41500.1 | chr2:17304319-17306855 REVERSE LENGTH=555 50 2e-06
AT3G21540.1 | chr3:7586100-7590856 REVERSE LENGTH=956 50 3e-06
AT5G08390.1 | chr5:2701448-2706910 FORWARD LENGTH=840 50 3e-06
AT4G02730.1 | chr4:1207759-1209066 FORWARD LENGTH=334 50 4e-06
AT1G61210.1 | chr1:22564785-22571555 FORWARD LENGTH=1182 49 9e-06
>AT3G53390.1 | chr3:19792781-19796428 FORWARD LENGTH=559
Length = 558
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/539 (61%), Positives = 401/539 (74%), Gaps = 13/539 (2%)
Query: 24 LKTYFKTPEGRYKLQYEKTHSAAVLHYNHGGKTVSQLTVAYLKEK--PAGQXXXXXXXXX 81
+KTYFKTPEG+YKL YEKTHS+ +LHY HG KTV+Q+T+A LKE+ P+
Sbjct: 27 IKTYFKTPEGKYKLHYEKTHSSGLLHYAHG-KTVTQVTIAQLKERAAPSTPTGTSSGYSA 85
Query: 82 XXXMRSAAARLLGSGNGNRTLSFVGGNGVSRAVXXXXXXXXXXXXXXXXXXXQAVANYDG 141
RSA ARLLG+GNG+R LSFVGGNG ++V N+DG
Sbjct: 86 SSGFRSATARLLGTGNGSRALSFVGGNGGGKSVSTSSRISGSFAASNSNTSMTNT-NFDG 144
Query: 142 KGTYIIFNTADTLFISDLNSQDKDPIKSIHFSNSNPLCHAFDPEAKEGHDLIIGMGSGDV 201
KGTY++FN +D +FI DLNSQ+KDP+KSIHFSNSNP+CHAFDP+AK+GHDL+IG+ SGDV
Sbjct: 145 KGTYLVFNVSDAIFICDLNSQEKDPVKSIHFSNSNPMCHAFDPDAKDGHDLLIGLNSGDV 204
Query: 202 YSMSLRQQLQDSGRKPVAAQHYNKGDKDGTSTGSRCTSVAWVPEREGIFVVSHSDGNLYV 261
Y++SLRQQLQD +K V A HYNK DG+ SRCTS++WVP +G FVV+H+DGNLYV
Sbjct: 205 YTVSLRQQLQDVSKKLVGALHYNK---DGSVNNSRCTSISWVPGGDGAFVVAHADGNLYV 261
Query: 262 YDKCKDGNTECTFPAIKDPAQLMISHAKSSKSNPIARWHVCQGSINAISFSPDGAYLATV 321
Y+K KDG TE TFPAI+DP Q + AK SKSNP+ARWH+CQGSIN+I+FS DGA+LATV
Sbjct: 262 YEKNKDGATESTFPAIRDPTQFSVDKAKYSKSNPVARWHICQGSINSIAFSNDGAHLATV 321
Query: 322 GRDGYLRVFDFSKEQLIFGGKSYYGALLCCTWSSDGKYLLTGGEDDLVQVWSMDDRKIVA 381
GRDGYLR+FDF ++L+ GGKSYYGALLCC+WS DGKY+LTGGEDDLVQVWSM+DRK+VA
Sbjct: 322 GRDGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMDGKYILTGGEDDLVQVWSMEDRKVVA 381
Query: 382 WGEGHNSWVSGVSFDSYWSPPNSDGTGENTVYRFGSVGQDTQLLLWDLALDEIAVPLRHX 441
WGEGHNSWVSGV+FDS WS PNSDG+GE+ +YRFGSVGQDTQLLLWDL +DEI VPLR
Sbjct: 382 WGEGHNSWVSGVAFDSNWSSPNSDGSGEHVMYRFGSVGQDTQLLLWDLEMDEIVVPLRR- 440
Query: 442 XXXXXXXXXXXXXAHWDNACLPTGVLQPSPRMRDVPKLSPLVAHRVHVDPLSGLVFTNES 501
AHWDN +P G LQP+P RDVPKLSP++AHRVH +PLSGL+FT ES
Sbjct: 441 APGGSPTYSTGSSAHWDNV-IPMGTLQPAPCKRDVPKLSPIIAHRVHTEPLSGLMFTQES 499
Query: 502 ILTICREGLIKIWVRP---DXXXXXXXXXXXXLVLGNPVSKDRVITTSNK-ATGSSFKQ 556
++T CREG IKIW RP + +L +KD + S+K +GS+FKQ
Sbjct: 500 VVTACREGHIKIWTRPSESETQTNSSEANPTTALLSTSFTKDNKASLSSKIISGSTFKQ 558
>AT2G37160.2 | chr2:15609047-15612529 FORWARD LENGTH=574
Length = 573
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/526 (61%), Positives = 383/526 (72%), Gaps = 37/526 (7%)
Query: 24 LKTYFKTPEGRYKLQYEKTHSAAVLHYNHGGKTVSQL----------------------- 60
+KTYFKTPEG+YKL YEKTH + +LHY HG KTV+Q+
Sbjct: 27 IKTYFKTPEGKYKLHYEKTHPSGLLHYTHG-KTVTQVLCKNIKCTFHFYVLKVVSENGFV 85
Query: 61 ------TVAYLKEKPAGQXXXXXXXXXXXX--MRSAAARLLGSGNGNRTLSFVGGNGVSR 112
T+A+LK+KPA RSA ARLLG GNGNR LSFVGGNG ++
Sbjct: 86 KFWCQVTLAHLKDKPAPSTPTGTSSSSTASSGFRSATARLLGGGNGNRALSFVGGNGGAK 145
Query: 113 AVXXXXXXXXXXXXXXXXXXXQAVANYDGKGTYIIFNTADTLFISDLNSQDKDPIKSIHF 172
V N+DGKGTY++FN D +FISDLNSQDKDP+KSIH
Sbjct: 146 NVGASSRIGASFAASSSNTSATNT-NFDGKGTYLVFNVGDAIFISDLNSQDKDPVKSIHI 204
Query: 173 SNSNPLCHAFDPEAKEGHDLIIGMGSGDVYSMSLRQQLQDSGRKPVAAQHYNKGDKDGTS 232
SNSNP+CHAF P+AK+GHDL+IG+ SGDVY++SLRQQLQD G+K V+AQHYNK DG+
Sbjct: 205 SNSNPMCHAFHPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVGKKLVSAQHYNK---DGSV 261
Query: 233 TGSRCTSVAWVPEREGIFVVSHSDGNLYVYDKCKDGNTECTFPAIKDPAQLMISHAKSSK 292
SRCTS+AWVP +G FV +H+DGNLYVY+K K+G T+ +F AI+DP Q + AK SK
Sbjct: 262 NNSRCTSIAWVPGGDGSFVAAHADGNLYVYEKNKEGATDSSFSAIRDPTQFSVDKAKYSK 321
Query: 293 SNPIARWHVCQGSINAISFSPDGAYLATVGRDGYLRVFDFSKEQLIFGGKSYYGALLCCT 352
SNP+ARWH+ QG+IN+I+FS DGAYLATVGRDGYLR+FDFS ++L+ G KSYYGALLCC
Sbjct: 322 SNPVARWHIGQGAINSIAFSNDGAYLATVGRDGYLRIFDFSTQKLVCGVKSYYGALLCCA 381
Query: 353 WSSDGKYLLTGGEDDLVQVWSMDDRKIVAWGEGHNSWVSGVSFDSYWSPPNSDGTGENTV 412
WS DGKYLLTGGEDDLVQVWSM+DRK+VAWGEGHNSWVSGV+FDSYWS PNS+G+GEN +
Sbjct: 382 WSMDGKYLLTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSEGSGENVM 441
Query: 413 YRFGSVGQDTQLLLWDLALDEIAVPLRHXXXXXXXXXXXXXXAHWDNACLPTGVLQPSPR 472
YRFGSVGQDTQLLLWDL +DEI VPLR AHWDN +P G LQP+P
Sbjct: 442 YRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSAHWDN-IVPMGTLQPAPC 500
Query: 473 MRDVPKLSPLVAHRVHVDPLSGLVFTNESILTICREGLIKIWVRPD 518
MRDVPKLSP+VAHRVH +PLSGL+FT ES++T CREG +KIW RPD
Sbjct: 501 MRDVPKLSPVVAHRVHTEPLSGLIFTQESLITACREGHLKIWTRPD 546
>AT5G52820.1 | chr5:21401423-21404203 FORWARD LENGTH=474
Length = 473
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 305 SINAISFSPDGAYLATVGRDGYLRVFDFSKEQLIFGGKSYYGALLCCTWSSDGKYLLTGG 364
++ +SFSPDG LA+ D +R++D E +F K + +L WS DGK+L++G
Sbjct: 111 AVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGS 170
Query: 365 EDDLVQVWSMDDRKIVAWG-EGHNSWVSGVSFDSYWSPPNSDGTGENTVYRFGSVGQDTQ 423
+ + W+ ++ GH W++G+S W P + + RF + +D
Sbjct: 171 KSGEICCWNPKKGELEGSPLTGHKKWITGIS----WEPVHLS----SPCRRFVTSSKDGD 222
Query: 424 LLLWDLALDEIAVPL 438
+WD+ L + + L
Sbjct: 223 ARIWDITLKKSIICL 237
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 284 MISHAKSSKSNPIARWHVCQGSINAISFSPDGAYLATVGRDGYLRVFDFSKEQLIFGGKS 343
M S P R Q +N + FSPDG ++A+ D +R+++ Q + +
Sbjct: 341 MFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRG 400
Query: 344 YYGALLCCTWSSDGKYLLTGGEDDLVQVWSMDDRKIVAWGEGHNSWVSGVSFDSYWSPPN 403
+ G + +WS+D + LL+G +D +++W + +K+ GH V V WSP
Sbjct: 401 HVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVD----WSP-- 454
Query: 404 SDGTGENTVYRFGSVGQDTQLLLW 427
GE V S G+D L LW
Sbjct: 455 ---DGEKVV----SGGKDRVLKLW 471
>AT2G43770.1 | chr2:18134272-18135303 REVERSE LENGTH=344
Length = 343
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 303 QGSINAISFSPDGAYLATVGRDGYLRVFDF------SKEQLIFGGK--SYYGALLCCTWS 354
Q +I +S SPDG+YL T G D L V+D ++ IF G ++ LL C+WS
Sbjct: 222 QDTITGMSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS 281
Query: 355 SDGKYLLTGGEDDLVQVWSMDDRKIVAWGEGHNSWVSGVSF 395
DG + G D +V +W R+ + GH V+ F
Sbjct: 282 PDGTKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVF 322
>AT5G23430.1 | chr5:7894073-7899862 REVERSE LENGTH=838
Length = 837
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 308 AISFSPDGAYLATVGRDGYLRVFDFSKEQLIFGGKSYYGALLCCTWSSDGKYLLTGGEDD 367
++ F P G + A+ D L+++D K+ I K + + ++ DG+++++GGED+
Sbjct: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDN 165
Query: 368 LVQVWSMDDRKIVAWGEGHNSWVSGVSFDSYWSPPNSDGTGENTVYRFGSVGQDTQLLLW 427
+V+VW + K++ + H + + F + + + D + W
Sbjct: 166 IVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHE-------------FLLATGSADRTVKFW 212
Query: 428 DLALDEI 434
DL E+
Sbjct: 213 DLETFEL 219
>AT1G11160.1 | chr1:3733406-3739363 FORWARD LENGTH=1022
Length = 1021
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 303 QGSINAISFSPDGAYLATVGRDGYLRVFDFSKEQLIFGGKSYYGALLCCTWSSDGKYLLT 362
+ + +A+ F P G +LA+ D LRV+D K+ I K + + +S DG+++++
Sbjct: 100 RSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVS 159
Query: 363 GGEDDLVQVWSMDDRKIVAWGEGHNSWVSGVSF 395
GG D++V+VW + K++ + H + + F
Sbjct: 160 GGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDF 192
>AT2G41500.1 | chr2:17304319-17306855 REVERSE LENGTH=555
Length = 554
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 305 SINAISFSPDGAYLATVGRDGYLRVFDFSKEQLIFGGKSYYGALLCCTWSSDGKYLLTGG 364
S+ I+F DGA A+ G D RV+D + I + + + +S +G +L +GG
Sbjct: 383 SVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGG 442
Query: 365 EDDLVQVWSMDDRKIVAWGEGHNSWVSGVSFD 396
ED+ ++W + RK + H + VS V ++
Sbjct: 443 EDNQCRIWDLRMRKSLYIIPAHANLVSQVKYE 474
>AT3G21540.1 | chr3:7586100-7590856 REVERSE LENGTH=956
Length = 955
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 30/155 (19%)
Query: 278 KDPAQLMISHAKSSKSNPIARWHVCQGSINAISFSPDGAYLATVGRDGYLRVFDFSKEQL 337
K +L +S+ KS K N + A++ SPD ++A D ++VF +
Sbjct: 524 KATKKLTVSNVKSMKMND---------DVLAVAISPDAKHIAVALLDSTVKVFYMDSLKF 574
Query: 338 IFGGKSYYGALLCCTWSSDGKYLLTGGEDDLVQVWSMD----DRKIVAWGEGHNSWVSGV 393
+ ++C SSDG+ ++TG +D +++W +D + I A G+ V GV
Sbjct: 575 YLSLYGHKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSIFAHGDS----VMGV 630
Query: 394 SFDSYWSPPNSDGTGENTVYRFGSVGQDTQLLLWD 428
F NT Y F S+G+D + WD
Sbjct: 631 KF------------VRNTHYLF-SIGKDRLVKYWD 652
>AT5G08390.1 | chr5:2701448-2706910 FORWARD LENGTH=840
Length = 839
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 308 AISFSPDGAYLATVGRDGYLRVFDFSKEQLIFGGKSYYGALLCCTWSSDGKYLLTGGEDD 367
+++F P G + A+ D L+++D K+ I K + + ++ DG+++++GGED+
Sbjct: 106 SVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDN 165
Query: 368 LVQVWSMDDRKIVAWGEGHNSWVSGVSFDSYWSPPNSDGTGENTVYRFGSVGQDTQLLLW 427
+V+VW + K++ + H + + F + + + D + W
Sbjct: 166 VVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHE-------------FLLATGSADKTVKFW 212
Query: 428 DLALDEI 434
DL E+
Sbjct: 213 DLETFEL 219
>AT4G02730.1 | chr4:1207759-1209066 FORWARD LENGTH=334
Length = 333
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 29/154 (18%)
Query: 245 EREGIFVVSHS-DGNLYVYDKCKDGNTECTFPAIKDPAQLMISHAKSSKSNPIARWHVCQ 303
R+G +VS S DG+ ++D K+G T K PA +S AK
Sbjct: 179 NRDGSLIVSASHDGSCKIWDA-KEGTCLKTLIDDKSPA---VSFAK-------------- 220
Query: 304 GSINAISFSPDGAYLATVGRDGYLRVFDFSKEQLIFGGKSYYGALLCCTWS---SDGKYL 360
FSP+G ++ D L++ +++ + + + + C T + ++GKY+
Sbjct: 221 -------FSPNGKFILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITSAFSVTNGKYI 273
Query: 361 LTGGEDDLVQVWSMDDRKIVAWGEGHNSWVSGVS 394
++G ED+ V +W + R I+ EGH V VS
Sbjct: 274 VSGSEDNCVYLWDLQARNILQRLEGHTDAVISVS 307
>AT1G61210.1 | chr1:22564785-22571555 FORWARD LENGTH=1182
Length = 1181
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 49/89 (55%)
Query: 307 NAISFSPDGAYLATVGRDGYLRVFDFSKEQLIFGGKSYYGALLCCTWSSDGKYLLTGGED 366
+A+ F P G +LA+ D L+++D K+ I K + + ++ DG+++++GG D
Sbjct: 104 SAVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLD 163
Query: 367 DLVQVWSMDDRKIVAWGEGHNSWVSGVSF 395
++V+VW + K++ + H + + F
Sbjct: 164 NVVKVWDLTAGKLLHEFKFHEGPIRSLDF 192
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,867,440
Number of extensions: 509200
Number of successful extensions: 1723
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1732
Number of HSP's successfully gapped: 13
Length of query: 563
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 459
Effective length of database: 8,255,305
Effective search space: 3789184995
Effective search space used: 3789184995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)