BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0170600 Os12g0170600|AK067033
         (444 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71990.1  | chr1:27100345-27102097 FORWARD LENGTH=402          436   e-122
AT3G19280.1  | chr3:6681409-6683801 REVERSE LENGTH=502             92   7e-19
AT1G49710.1  | chr1:18391622-18393769 REVERSE LENGTH=514           82   5e-16

>AT1G71990.1 | chr1:27100345-27102097 FORWARD LENGTH=402
          Length = 401

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 195/282 (69%), Positives = 234/282 (82%)

Query: 160 LDGVYTCRCGVSCVWSKSAAAVDRPDALLFEGATPPPQRMKGLPLRVYLDLEAARKPTGF 219
           L+ +Y+CRCG++C+W+KS+   D PDALLFE  TPP QR  G PLRVY++LEA RK +G 
Sbjct: 118 LENLYSCRCGMTCLWTKSSVLADSPDALLFETTTPPLQRRVGDPLRVYMELEAGRKRSGR 177

Query: 220 EDIFIGYHAKDDVQVTYAGKSFHTSRSYHVSTEKRNDALIYWSSSRCLPHRDKVAKDFLS 279
           EDIFI YHAKDDVQ TYAG  FH +R+YH+S  K ND L+YWSSSRCLPHRD++AK  L 
Sbjct: 178 EDIFISYHAKDDVQTTYAGSLFHNNRNYHISPHKNNDVLVYWSSSRCLPHRDRLAKSLLD 237

Query: 280 LVPHHSFGKCLNNVDGPDMALSMYPVCSTNDNGKPHWWDHLHCAMSHYKFVLAIENTKTE 339
           L+PHHSFGKCLNNV G D ALSMYP C    N +  W+DHLHCAMSHYKFVLAIENT  E
Sbjct: 238 LIPHHSFGKCLNNVGGLDSALSMYPECVAEHNAEAKWYDHLHCAMSHYKFVLAIENTAVE 297

Query: 340 SYVTEKLFYALEAGSVPIYFGAPNVWDFIPPNSIIDASKFSSLRELASYVKAVANDPVAY 399
           SYVTEKLFYAL++GSVPIYFGA NV DF+PP+S+ID SKF S++ELA+YVK + +DPVAY
Sbjct: 298 SYVTEKLFYALDSGSVPIYFGASNVQDFVPPHSVIDGSKFGSMQELAAYVKRLGDDPVAY 357

Query: 400 AEYHAWRRCGTLGNFGRSREMSLDTLPCRLCELVSKRGGRNA 441
           +EYHAWRRCG +GN+G++R +SLDTLPCRLCE +S+RGG+NA
Sbjct: 358 SEYHAWRRCGLMGNYGKTRAVSLDTLPCRLCEEISRRGGKNA 399



>AT3G19280.1 | chr3:6681409-6683801 REVERSE LENGTH=502
          Length = 501

 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 5/141 (3%)

Query: 297 DMALSMYPVCSTNDNGKPHWWDHLHCAMSHYKFVLAIENTKTESYVTEKLFYALEAGSVP 356
           ++ +  Y  C  N +G     +    A+ HYKF LA ENT  E YVTEK F +L AGSVP
Sbjct: 237 NVKIDSYGGCHRNRDGSVEKVE----ALKHYKFSLAFENTNEEDYVTEKFFQSLVAGSVP 292

Query: 357 IYFGAPNVWDFIP-PNSIIDASKFSSLRELASYVKAVANDPVAYAEYHAWRRCGTLGNFG 415
           +  GAPN+ +F P P+S +   +   ++ +A  +K +A++P AY +   W+  G   +F 
Sbjct: 293 VVVGAPNIEEFAPSPDSFLHIKQMDDVKAVAKKMKYLADNPDAYNQTLRWKHEGPSDSFK 352

Query: 416 RSREMSLDTLPCRLCELVSKR 436
              +M+     CRLC  V+ R
Sbjct: 353 ALIDMAAVHSSCRLCIFVATR 373



>AT1G49710.1 | chr1:18391622-18393769 REVERSE LENGTH=514
          Length = 513

 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 273 VAKDFLSLVPHHSFG-KCLNNVDGPDMALSMYPVCSTNDNGKPHWWDHLHCAMSHYKFVL 331
           +A  F+S     +F  + L  +   ++ +  Y  C  N +GK    D +  A+  YKF L
Sbjct: 223 IAAAFISNCGARNFRLQALEALMKTNIKIDSYGGCHRNRDGK---VDKVE-ALKRYKFSL 278

Query: 332 AIENTKTESYVTEKLFYALEAGSVPIYFGAPNVWDFIP-PNSIIDASKFSSLRELASYVK 390
           A ENT  E YVTEK F +L AGSVP+  G PN+ +F P  +S +       +  +A  +K
Sbjct: 279 AFENTNEEDYVTEKFFQSLVAGSVPVVVGPPNIEEFAPASDSFLHIKTMEDVEPVAKRMK 338

Query: 391 AVANDPVAYAEYHAWRRCGTLGNFGRSREMSLDTLPCRLCELVSKR 436
            +A +P AY +   W+  G   +F    +M+     CRLC  ++ R
Sbjct: 339 YLAANPAAYNQTLRWKYEGPSDSFKALVDMAAVHSSCRLCIFLATR 384



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,260,469
Number of extensions: 339563
Number of successful extensions: 753
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 3
Length of query: 444
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 342
Effective length of database: 8,310,137
Effective search space: 2842066854
Effective search space used: 2842066854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)