BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0169700 Os12g0169700|AK103904
(273 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47260.1 | chr1:17321384-17323347 REVERSE LENGTH=279 456 e-129
AT1G19580.1 | chr1:6774937-6777092 FORWARD LENGTH=276 432 e-121
AT5G66510.2 | chr5:26550016-26551496 REVERSE LENGTH=270 352 1e-97
AT3G48680.1 | chr3:18035107-18036773 FORWARD LENGTH=257 142 2e-34
AT5G63510.2 | chr5:25424054-25425612 FORWARD LENGTH=280 130 6e-31
AT1G47420.1 | chr1:17395774-17397176 REVERSE LENGTH=258 83 2e-16
>AT1G47260.1 | chr1:17321384-17323347 REVERSE LENGTH=279
Length = 278
Score = 456 bits (1173), Expect = e-129, Method: Compositional matrix adjust.
Identities = 209/264 (79%), Positives = 243/264 (92%)
Query: 1 MGTLGRAIYTVGKWIRGTGQAMDRLGSTIQGGLRVEEQLSRHRTIMNIFEKEPRVHKDVF 60
MGTLGRAIYTVG WIRGTGQA+DR+GS +QG R+EE LSRHRT+MN+F+K P V KDVF
Sbjct: 1 MGTLGRAIYTVGNWIRGTGQALDRVGSLLQGSHRIEEHLSRHRTLMNVFDKSPLVDKDVF 60
Query: 61 VAPSAAVIGDVEIGHGSSIWYGSILRGDVNSIHIGSGSNIQDNSLVHVAKANISGKVLPT 120
VAPSA+VIGDV+IG GSSIWYG +LRGDVN+I +GSG+NIQDN+LVHVAK NISGKVLPT
Sbjct: 61 VAPSASVIGDVQIGKGSSIWYGCVLRGDVNNISVGSGTNIQDNTLVHVAKTNISGKVLPT 120
Query: 121 IIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV 180
+IG+NVT+GHSAV+H CTVED+AFVGMGATLLDGVVVEKH+MV AGSLVKQNTRIPSGEV
Sbjct: 121 LIGDNVTVGHSAVIHGCTVEDDAFVGMGATLLDGVVVEKHAMVAAGSLVKQNTRIPSGEV 180
Query: 181 WVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAENSKTFDEIELEKMLRKKYAHKDE 240
W GNPAKF+RKLT+EEI +I+QSA NYINLAQ+HA+ENSK+F++IE+E+ LRKKYA KDE
Sbjct: 181 WGGNPAKFMRKLTDEEIVYISQSAKNYINLAQIHASENSKSFEQIEVERALRKKYARKDE 240
Query: 241 EYDSMLGVVREIPPELILPDNILP 264
+YDSMLG+ RE PPELILPDN+LP
Sbjct: 241 DYDSMLGITRETPPELILPDNVLP 264
>AT1G19580.1 | chr1:6774937-6777092 FORWARD LENGTH=276
Length = 275
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 205/269 (76%), Positives = 234/269 (86%)
Query: 1 MGTLGRAIYTVGKWIRGTGQAMDRLGSTIQGGLRVEEQLSRHRTIMNIFEKEPRVHKDVF 60
MGTLGRA Y+VG WIR TGQA+DRLG +QG EQLSRHRT+MN+F+K P V K+ F
Sbjct: 1 MGTLGRAFYSVGFWIRETGQALDRLGCRLQGKNYFREQLSRHRTLMNVFDKAPIVDKEAF 60
Query: 61 VAPSAAVIGDVEIGHGSSIWYGSILRGDVNSIHIGSGSNIQDNSLVHVAKANISGKVLPT 120
VAPSA+VIGDV IG GSSIWYG +LRGDVN++ +GSG+NIQDNSLVHVAK+N+SGKV PT
Sbjct: 61 VAPSASVIGDVHIGRGSSIWYGCVLRGDVNTVSVGSGTNIQDNSLVHVAKSNLSGKVHPT 120
Query: 121 IIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEV 180
IIG+NVTIGHSAVLH CTVEDE F+GMGATLLDGVVVEKH MV AG+LV+QNTRIPSGEV
Sbjct: 121 IIGDNVTIGHSAVLHGCTVEDETFIGMGATLLDGVVVEKHGMVAAGALVRQNTRIPSGEV 180
Query: 181 WVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAENSKTFDEIELEKMLRKKYAHKDE 240
W GNPA+FLRKLT+EEIAFI+QSATNY NLAQ HAAEN+K + IE EK+LRKK+A KDE
Sbjct: 181 WGGNPARFLRKLTDEEIAFISQSATNYSNLAQAHAAENAKPLNVIEFEKVLRKKHALKDE 240
Query: 241 EYDSMLGVVREIPPELILPDNILPNKAQK 269
EYDSMLG+VRE PPEL LP+NILP+K K
Sbjct: 241 EYDSMLGIVRETPPELNLPNNILPDKETK 269
>AT5G66510.2 | chr5:26550016-26551496 REVERSE LENGTH=270
Length = 269
Score = 352 bits (903), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 170/273 (62%), Positives = 207/273 (75%), Gaps = 19/273 (6%)
Query: 1 MGTLGRAIYTVGKWIRGTGQAMDRLGSTIQGGLRVEEQLSRHRTIMNIFEKEPRVHKDVF 60
MGT+G+A Y+VG WIR TGQA+DRLG +QG EQLSRHRT+MN+F+K P V K F
Sbjct: 1 MGTMGKAFYSVGFWIRETGQALDRLGCRLQGKNHFREQLSRHRTLMNVFDKTPNVDKGAF 60
Query: 61 VAPSAAVIGDVEIGHGSSIWYGSILR-----------GDVNSIHIGSGSNIQDNSLVHVA 109
VAP+A++ GDV +G GSSIWYG +LR GD NSI +G+G+NIQDN+LVHVA
Sbjct: 61 VAPNASLSGDVHVGRGSSIWYGCVLRDIPFDLMTDSAGDANSISVGAGTNIQDNALVHVA 120
Query: 110 KANISGKVLPTIIGNNVTIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLV 169
K N+SGKVLPT+IG+NVTIGHSAVLH CTVEDEA++G AT+LDG VEKH+MV +G+LV
Sbjct: 121 KTNLSGKVLPTVIGDNVTIGHSAVLHGCTVEDEAYIGTSATVLDGAHVEKHAMVASGALV 180
Query: 170 KQNTRIPSGEVWVGNPAKFLRKLTEEEIAFIAQSATNYINLAQVHAAENSKTFDEIELEK 229
+QNTRIPSGEVW GNPAKFLRK+TEEE F + SA Y NLAQ HA EN+K DE E +K
Sbjct: 181 RQNTRIPSGEVWGGNPAKFLRKVTEEERVFFSSSAVEYSNLAQAHATENAKNLDEAEFKK 240
Query: 230 MLRKKYAHKDEEYDSMLGVVREIPPELILPDNI 262
+L KK A +D EYDS+L +L LP+N+
Sbjct: 241 LLNKKNA-RDTEYDSVL-------DDLTLPENV 265
>AT3G48680.1 | chr3:18035107-18036773 FORWARD LENGTH=257
Length = 256
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 119/196 (60%), Gaps = 3/196 (1%)
Query: 34 RVEEQLSRHRTIMNIFEKEPRVHKDVFVAPSAAVIGDVEIGHGSSIWYGSILRGDVNSIH 93
RV+ R I+ + + P+V D +VAP+ + G V + GSS+W G++LRGD+N I
Sbjct: 51 RVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKIT 110
Query: 94 IGSGSNIQDNSLVHVAKANISGKVLPTIIGNNVTIGHSAVLHACTVEDEAFVGMGATLLD 153
+G SN+Q+ +VH A ++ +G T+I VT+G ++L +CT+E E +G + L++
Sbjct: 111 VGFCSNVQERCVVHAAWSSPTGLPAQTLIDRYVTVGAYSLLRSCTIEPECIIGQHSILME 170
Query: 154 GVVVEKHSMVGAGSLVKQNTRIPSGEVWVGNPAKFLRKLTEEEIAFIAQSATNYINLAQV 213
G +VE S++ AGS++ RIPSGE+W GNPA+F+R LT EE I + A +L+
Sbjct: 171 GSLVETRSILEAGSVLPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGD 230
Query: 214 HAAE---NSKTFDEIE 226
+ +E S + E+E
Sbjct: 231 YFSEFLPYSTIYLEVE 246
>AT5G63510.2 | chr5:25424054-25425612 FORWARD LENGTH=280
Length = 279
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 30/223 (13%)
Query: 34 RVEEQLSRHRTIMNIFEKEPRVHKDVFVAPSAAVIGDVEIGHGSSIWYGSILRGDVNSIH 93
RV+ R I+ + + P+V D +VAP+ + G V + GSS+W G++LRGD+N I
Sbjct: 47 RVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKIT 106
Query: 94 IGSGSNIQDNSLVHVAKANIS-----------------------GKV--LP--TIIGNNV 126
+G SN+Q+ +VH A ++ + GK LP TII V
Sbjct: 107 VGFCSNVQERCVVHAAWSSPTVGCNGDKAVSHGCELVFAPRFRQGKFSRLPAATIIDRYV 166
Query: 127 TIGHSAVLHACTVEDEAFVGMGATLLDGVVVEKHSMVGAGSLVKQNTRIPSGEVWVGNPA 186
T+G ++L +CT+E E +G + L++G +VE S++ AGS+V RIPSGE+W GNPA
Sbjct: 167 TVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPA 226
Query: 187 KFLRKLTEEEIAFIAQSATNYINLAQVHAAE---NSKTFDEIE 226
+F+R LT EE I + A +L+ + +E S + E+E
Sbjct: 227 RFIRTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTVYLEVE 269
>AT1G47420.1 | chr1:17395774-17397176 REVERSE LENGTH=258
Length = 257
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 56/86 (65%), Gaps = 13/86 (15%)
Query: 1 MGTLGRAIYTVGKWIRGTGQAMDRLGSTIQGGLRVEEQLSRHRTIMNIFEKEPRVHKDVF 60
MGTLGRAI+TVG IRGT QA R+GS +QG +E+ LSRHRT++
Sbjct: 1 MGTLGRAIHTVGNRIRGTAQAQARVGSLLQGSHHIEKHLSRHRTLIT------------- 47
Query: 61 VAPSAAVIGDVEIGHGSSIWYGSILR 86
VAP+A+VIGDV+I GS I Y S+ R
Sbjct: 48 VAPNASVIGDVQINKGSFISYASVSR 73
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,957,961
Number of extensions: 251870
Number of successful extensions: 661
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 6
Length of query: 273
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 176
Effective length of database: 8,447,217
Effective search space: 1486710192
Effective search space used: 1486710192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)