BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0164600 Os12g0164600|J065163H24
(414 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G18740.1 | chr1:6464125-6465273 FORWARD LENGTH=383 198 4e-51
AT1G74450.1 | chr1:27982737-27983930 FORWARD LENGTH=398 179 2e-45
AT1G43630.1 | chr1:16436445-16437686 REVERSE LENGTH=414 147 1e-35
AT1G63930.1 | chr1:23727927-23729174 FORWARD LENGTH=416 119 4e-27
AT4G23530.1 | chr4:12279171-12280361 FORWARD LENGTH=397 105 7e-23
AT4G11300.1 | chr4:6872345-6873460 REVERSE LENGTH=372 70 2e-12
>AT1G18740.1 | chr1:6464125-6465273 FORWARD LENGTH=383
Length = 382
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 182/403 (45%), Gaps = 51/403 (12%)
Query: 22 LLSLRRDHVAM------------PSGEEADLEAFQRHFAASXXXXXXXXXXXXXXXXXXX 69
LLSLRRD V PS E +L++FQR A
Sbjct: 14 LLSLRRDQVDSSTVVSGSSSHHEPSTMEVELDSFQRQVAEKFIDLNASSND--------- 64
Query: 70 XXXXXXXILSVAWIRRLLEAFILCQEEFRVFVAQARRRGALPAAGEKLVVEFHERAVKAL 129
+LS+ WI +LL++F+ CQEEFR V R + + + ++L+ ++ ER++KAL
Sbjct: 65 -------LLSLEWIGKLLDSFLCCQEEFRAIVFNHRSQIS-KSPMDRLISDYFERSIKAL 116
Query: 130 DVCNAARDGVDQVRRWERLADIAASVLLAPGEIHEGQLRRARKAXXXXXXXXXXXTAASG 189
DVCNA RDG++Q+R+WE+LADI S L + I EGQLRRA+KA
Sbjct: 117 DVCNAIRDGIEQIRQWEKLADIVISALDSHRPIGEGQLRRAKKALIDLAIGMLDEKDHPS 176
Query: 190 SGGVASFLASHRNXXXXXXXXXXXXXXXXXXTSSSHFXXXXXXXXXXXXXXXQLQAIGAG 249
+A HRN S HF QLQA+ +
Sbjct: 177 GTNLA-----HRNRSFGRVKDSHHR-------SIGHFRSLSWSVSRSWSASKQLQALASN 224
Query: 250 LAAPRAHEA----GLAAPVYAMGCXXXXXXXXXXXXXPCPDRSTXXXXXXXXXXXXXXXX 305
LA PR ++ GLA PVY M PC DR
Sbjct: 225 LATPRPNDVVASNGLAVPVYTMTSVLLFVMWVLVAAIPCQDRGL------QVNFFVPRHF 278
Query: 306 XXXXXXXTLQERLAEEGKRKDRRNSCGLLKEIHVLEKSTQKLTDAIDAAPIPLFGXXXXX 365
+L +++ EE KR+DR+N CGLLKEI +EKS++ + + ID+ PL
Sbjct: 279 QWAAPVMSLHDKIVEESKRRDRKNCCGLLKEIDRIEKSSRLMNELIDSIHFPLNDDKEVE 338
Query: 366 XXXXXXXXXXXXXXMRDGLEPLERQVREVFHRIVRSRVEGLDS 408
+R+GL+P ER+VREVFHRIVRSR E LDS
Sbjct: 339 VKQRVDELVQVREALRNGLDPFERKVREVFHRIVRSRTESLDS 381
>AT1G74450.1 | chr1:27982737-27983930 FORWARD LENGTH=398
Length = 397
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/343 (33%), Positives = 160/343 (46%), Gaps = 28/343 (8%)
Query: 77 ILSVAWIRRLLEAFILCQEEFRVFVAQARRRGALPAAGEKLVVEFHERAVKALDVCNAAR 136
+LS+ W+ +LL++F+ CQEEFR V R P ++LV ++ ER+VKALDVCNA R
Sbjct: 64 LLSLEWVGKLLDSFLSCQEEFRSIVINHRSMITKPPM-DRLVSDYFERSVKALDVCNAIR 122
Query: 137 DGVDQVRRWERLADIAASVLLAPG-------EIHEGQLRRARKAXXXXXXXXXXXTAASG 189
DGV+Q+R+W++L +I G + EGQ RRARK +S
Sbjct: 123 DGVEQIRQWQKLIEIVICAFNNNGGGSSGKRPLGEGQFRRARKTLIELAIGMLDEKDSS- 181
Query: 190 SGGVASFLASHRNXXXXXXXXXXXXXXXXXXTSSSHFXXXXXXXXXXXXXXXQLQAIGAG 249
+S + HRN + HF QLQAIG
Sbjct: 182 ---SSSVSSQHRNRSFGRNKEQLHHR------TIGHFRSLSWSVSRSWSASKQLQAIGNN 232
Query: 250 LAAPRAHE----AGLAAPVYAMGCXXXXXXXXXXXXXPCPDRSTXXXXXXXXXXXXXXXX 305
LA PRA + GL PVY M PC DR
Sbjct: 233 LATPRASDITATNGLIVPVYTMTTVLLFVMWALVAAIPCQDRG------LQVHFNVPRNY 286
Query: 306 XXXXXXXTLQERLAEEGKRKDRRNSCGLLKEIHVLEKSTQKLTDAIDAAPIPLFGXXXXX 365
+L +R+ EE K+++R+N+CGLLKEIH EK+++ + + +D+ PL
Sbjct: 287 QWGGSLMSLHDRIIEESKKRERKNTCGLLKEIHQFEKTSRLMNELVDSVQFPLSEEKEME 346
Query: 366 XXXXXXXXXXXXXXMRDGLEPLERQVREVFHRIVRSRVEGLDS 408
+++GL+P ER+VREVFHRIVRSR EGLD+
Sbjct: 347 VRERVEELGKLQEALKNGLDPFERKVREVFHRIVRSRTEGLDT 389
>AT1G43630.1 | chr1:16436445-16437686 REVERSE LENGTH=414
Length = 413
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 116/402 (28%), Positives = 176/402 (43%), Gaps = 53/402 (13%)
Query: 22 LLSLRRDHVAM--------PSGEEADLEAFQRHFAASXXXXXXXXXXXXXXXXXXXXXXX 73
LSLRRD + P E +L++FQR A
Sbjct: 42 FLSLRRDQAHLMDPTSFSEPMTMEVELDSFQRQVAEKFIDLNASADEAE----------- 90
Query: 74 XXXILSVAWIRRLLEAFILCQEEFRVFVAQARRRGALPAAGEKLVVEFHERAVKALDVCN 133
ILS+ WI +LL++F+ CQE+FRV + + + L ++L+ E+ ER+VKALDVCN
Sbjct: 91 ---ILSLEWIGKLLDSFLCCQEDFRVIIFNHKPQ-LLKQPMDRLIEEYFERSVKALDVCN 146
Query: 134 AARDGVDQVRRWERLADIAASVL-LAPGEIHEGQLRRARKAXXXXXXXXXXXTAASGSGG 192
A RDG++Q+R+W++L +I S L ++ EG++ RA+KA +S
Sbjct: 147 AIRDGIEQIRQWQKLIEIVISALDTNQRQLGEGEIHRAKKALIDLAIGMLDEKDSSN--- 203
Query: 193 VASFLASHRNXXXXXXXXXXXXXXXXXXTSSSHFXXXXXXXXXXXXXXXQLQAIGAGLAA 252
+HRN S S QLQ IG LA
Sbjct: 204 ------THRNRSFTRNKDHNQHIGYIRSLSWS--------VSRSWSASRQLQGIGNNLAT 249
Query: 253 PRAHEA----GLAAPVYAMGCXXXXXXXXXXXXXPCPDRSTXXXXXXXXXXXXXXXXXXX 308
PRA + GLA VY M PC DR
Sbjct: 250 PRASDVMATNGLALTVYTMTSILLFVTWVLVAAIPCQDRG------LHVHFYFPRHFQWA 303
Query: 309 XXXXTLQERLAEEGKRKDRRNS-CGLLKEIHVLEKSTQKLTDAIDAAPIPLFGXX-XXXX 366
+L +++ +E K++D++ CGLL+EI+ +E++++ L+D ID+ L
Sbjct: 304 VPVMSLHDKIMDESKKRDKKKKGCGLLREINQIERNSRMLSDLIDSDNFSLTDEKCTLEV 363
Query: 367 XXXXXXXXXXXXXMRDGLEPLERQVREVFHRIVRSRVEGLDS 408
+++GL+P +R+VR+VFH+IVR+R E LDS
Sbjct: 364 KERVQELMNVCEAIKEGLDPFDRKVRDVFHQIVRTRTEALDS 405
>AT1G63930.1 | chr1:23727927-23729174 FORWARD LENGTH=416
Length = 415
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 158/393 (40%), Gaps = 13/393 (3%)
Query: 23 LSLRRDHVAMPSGEEA--DLEAFQRHFAAS-XXXXXXXXXXXXXXXXXXXXXXXXXXILS 79
+S+RR+ + E+ DLE FQ+H A I+S
Sbjct: 15 ISIRRNQFVDVNNEQEQEDLELFQKHIADRFTELLSPPQPPPSDEINTVASVAATEQIMS 74
Query: 80 VAWIRRLLEAFILCQEEFRVFVAQARRRGALPAAG-EKLVVEFHERAVKALDVCNAARDG 138
V W+R+L++ F+ C+ EF+ + R + ++LV E +R++KALD+C A +G
Sbjct: 75 VTWLRKLMDVFLCCEAEFKAILLMGRDPTQISKPPFDRLVPEMLDRSIKALDICTAVVNG 134
Query: 139 VDQVRRWERLADIAASVLLAPGEIHEGQLRRARKAXXXXXXXXXXXTAASGSGGVASFLA 198
+D VR ++RLA+IA + L + +G +RRA++A + SGG
Sbjct: 135 IDSVRHYQRLAEIAVTA-LEQRPLGDGNVRRAKRALANLVVALSLEDKENVSGGGGGGGG 193
Query: 199 SHRNXXXXXXX---XXXXXXXXXXXTSSSHFXXXXXXXXXXXXXXXQLQAIGAGLAAPRA 255
++ + Q+ A+ A L PR
Sbjct: 194 GNKTTERSWSFGRRSGGSSAASKGGATIGQLKSSSWAVGRNWSAAKQIHAMTANLTPPRG 253
Query: 256 HE-AGLAAPVYAMGCXXXXXXXXXXXXXPCPDRSTXXXXXXXXXXXXXXXXXXXXXXXTL 314
+E AGL P++ M PC +RS +
Sbjct: 254 NEAAGLPQPMFIMSTVMVFVMWVLTAAVPCQERS----GLANHLPVPPKHLNWAQSLIGI 309
Query: 315 QERLAEEGKRKDRRNSCGLLKEIHVLEKSTQKLTDAIDAAPIPLFGXXXXXXXXXXXXXX 374
E++ +E K+K+++ S GL++E+ +EK L + D P
Sbjct: 310 HEKIGDEWKKKEKKGSAGLMEEMTRMEKLGHSLMEFADGFHYPAEKDAAESAAVQVAEMA 369
Query: 375 XXXXXMRDGLEPLERQVREVFHRIVRSRVEGLD 407
M + L PL++Q+REVFHRIVRSR E L+
Sbjct: 370 EICRRMEEELVPLQQQIREVFHRIVRSRAEILE 402
>AT4G23530.1 | chr4:12279171-12280361 FORWARD LENGTH=397
Length = 396
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 158/392 (40%), Gaps = 31/392 (7%)
Query: 23 LSLRRDH-VAMPSGEEADLE---AFQRHFAASXXXXXXXXXXXXXXXXXXXXXXXXXXIL 78
+S+RR+ V+M E +LE FQ+H A IL
Sbjct: 15 ISIRRNQIVSMDVNHEQELEELEYFQKH-VAERFSDLITSPSPPPSSSSSAVSQPSDPIL 73
Query: 79 SVAWIRRLLEAFILCQEEFRVFVAQARRRGALPAAGEKLVVEFHERAVKALDVCNAARDG 138
S+ W++ LL+ F+ C+ EF+ ++ + + + E+++ E +R +KALD+CNA +G
Sbjct: 74 SIPWLQNLLDVFMSCEAEFKAVLSTTQISKS--PSLERVLPEMLDRILKALDLCNAVVNG 131
Query: 139 VDQVRRWERLADIAASVLLAPGEIHEGQLRRARKAXXXXXXXXXXXT----AASGSGGVA 194
+D VR+ R A+IA + L + +G +RRA++A + GSG
Sbjct: 132 IDSVRQSRRFAEIAVTA-LKQRPLCDGSVRRAKRALTSLLIGLNADERRDRNSGGSGCSN 190
Query: 195 SFLASHRNXXXXXXXXXXXXXXXXXXTSSSHFXXXXXXXXXXXXXXXQLQAIGAGLAAPR 254
+ R+ S + Q+QA+ A L PR
Sbjct: 191 QRRTTSRSWSFGTRSNVTGGGLYGQVVSKNW------------SASKQIQAMVANLVLPR 238
Query: 255 AHEA-GLAAPVYAMGCXXXXXXXXXXXXXPCPDRSTXXXXXXXXXXXXXXXXXXXXXXXT 313
EA G A PVY M PC S +
Sbjct: 239 GAEASGPAMPVYIMSSVMVLVMWVLVAAVPCQTSSV-----LVAPLPLPKHQNWASAAMS 293
Query: 314 LQERLAEEGKRKDRR-NSCGLLKEIHVLEKSTQKLTDAIDAAPIPLFGXXXXXXXXXXXX 372
+QER+ EE KRK++R GL++E+ +EK L + + P
Sbjct: 294 IQERIGEEIKRKEKRCGGGGLMEEMQRMEKIGLSLMEFAERFRFPADEEEEVEVAEKVDE 353
Query: 373 XXXXXXXMRDGLEPLERQVREVFHRIVRSRVE 404
M GLE L+RQVR+VFHR+VRSR+E
Sbjct: 354 MEEICRRMEVGLEDLQRQVRQVFHRLVRSRIE 385
>AT4G11300.1 | chr4:6872345-6873460 REVERSE LENGTH=372
Length = 371
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 25/175 (14%)
Query: 2 PVTEHQXXXXXXXXXXXXXXLLSLRRDHVAMPSG---EEADLEAFQRHFAASXXXXXXXX 58
P TEHQ LS R V+M E+ +LE FQ+H A
Sbjct: 3 PATEHQSSFLSR---------LSRRNQVVSMEVNHEQEQEELEDFQKHVA---------- 43
Query: 59 XXXXXXXXXXXXXXXXXXILSVAWIRRLLEAFILCQEEFRVFVAQARRRGALPAAGEKLV 118
ILS+ W+R+LL+ F+ + EF + + + P +KLV
Sbjct: 44 -ERFAELLPPSDSPESYPILSIQWLRKLLDVFMSIESEFHSVLTSNPSQISKPPL-DKLV 101
Query: 119 VEFHERAVKALDVCNAARDGVDQVRRWERLADIAASVLLAPGEIHEGQLRRARKA 173
E +R VKALD+C A +GVD VR+ +R A+IA + L + +G +RRA++A
Sbjct: 102 PEMLDRIVKALDICTAVVNGVDSVRQIQRCAEIAVTA-LKQTPLSDGSVRRAKRA 155
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,981,242
Number of extensions: 125205
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 10
Length of query: 414
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,337,553
Effective search space: 2609654089
Effective search space used: 2609654089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)