BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0162500 Os12g0162500|AK065995
(328 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43700.1 | chr1:16484352-16486017 FORWARD LENGTH=342 162 3e-40
AT1G06070.1 | chr1:1835201-1837116 REVERSE LENGTH=424 145 3e-35
AT2G31370.3 | chr2:13379448-13381072 FORWARD LENGTH=399 144 6e-35
AT1G06850.1 | chr1:2105233-2106518 FORWARD LENGTH=338 139 2e-33
AT2G40620.1 | chr2:16954804-16956872 REVERSE LENGTH=368 137 1e-32
AT4G38900.1 | chr4:18139564-18141520 REVERSE LENGTH=554 124 5e-29
AT2G21230.3 | chr2:9093920-9096059 REVERSE LENGTH=526 115 4e-26
AT2G12900.1 | chr2:5293897-5295480 FORWARD LENGTH=265 78 8e-15
AT2G13150.1 | chr2:5437056-5438459 FORWARD LENGTH=263 74 1e-13
AT2G12940.1 | chr2:5317513-5319089 FORWARD LENGTH=295 72 3e-13
AT2G42380.2 | chr2:17647205-17648660 REVERSE LENGTH=322 71 8e-13
AT3G58120.1 | chr3:21521289-21523078 REVERSE LENGTH=330 68 8e-12
AT2G21235.1 | chr2:9096592-9098767 REVERSE LENGTH=551 52 6e-07
>AT1G43700.1 | chr1:16484352-16486017 FORWARD LENGTH=342
Length = 341
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/192 (50%), Positives = 119/192 (61%), Gaps = 7/192 (3%)
Query: 85 HMRSLSLDTAFFE--GFSLQXXXXXXXXXXXXXXXXHKRSGSMDG--VNSPFEGESAL-S 139
H+RS S+D+ FF+ G + + H RS SMDG ++ F ES L S
Sbjct: 110 HVRSFSVDSDFFDDLGVTEEKFIATSSGEKKKGNHHHSRSNSMDGEMSSASFNIESILAS 169
Query: 140 GGLPDYAKK--AMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXX 197
D KK M +R+AELAL+DPKRAKRILANRQSAARSKERKI+YT ELERKV
Sbjct: 170 VSGKDSGKKNMGMGGDRLAELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQTL 229
Query: 198 XXXXXXXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAA 257
R TS L EN+ LK+RLQ++E+QA+LRDALNEALR+E+ RLK+ A
Sbjct: 230 QNEATTLSAQVTMLQRGTSELNTENKHLKMRLQALEQQAELRDALNEALRDELNRLKVVA 289
Query: 258 GQAPNMNGNPFN 269
G+ P NGN +N
Sbjct: 290 GEIPQGNGNSYN 301
>AT1G06070.1 | chr1:1835201-1837116 REVERSE LENGTH=424
Length = 423
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 105/158 (66%), Gaps = 9/158 (5%)
Query: 119 HKRSGSMDGVNSPFEGESALSG-----GLPDYAKKAMPAERIAELALIDPKRAKRILANR 173
H+ S SMDG + + E +SG G+ +KKA+ A +++ELALIDPKRAKRI ANR
Sbjct: 165 HQHSQSMDGSTT-IKPEMLMSGNEDVSGVD--SKKAISAAKLSELALIDPKRAKRIWANR 221
Query: 174 QSAARSKERKIKYTSELERKVXXXXXXXXXXXXXXXXXXRDTSGLTAENRELKLRLQSME 233
QSAARSKERK++Y +ELERKV RDT+GL EN ELKLR+Q+ME
Sbjct: 222 QSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLGVENNELKLRVQTME 281
Query: 234 EQAKLRDALNEALREEVQRLKIAAGQAPNMNGNPFNGG 271
+Q L+DALN+AL+EEVQ LK+ GQ P+ NG N G
Sbjct: 282 QQVHLQDALNDALKEEVQHLKVLTGQGPS-NGTSMNYG 318
>AT2G31370.3 | chr2:13379448-13381072 FORWARD LENGTH=399
Length = 398
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 95/145 (65%), Gaps = 5/145 (3%)
Query: 119 HKRSGSMDGVNSPFEGESALSGGLPDYA---KKAMPAERIAELALIDPKRAKRILANRQS 175
H+ S SMDG S E +SG D A KK+M A ++AELALIDPKRAKRI ANRQS
Sbjct: 157 HQHSQSMDG--SMNINEMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQS 214
Query: 176 AARSKERKIKYTSELERKVXXXXXXXXXXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQ 235
AARSKERK +Y ELERKV RDT+GLT EN ELKLRLQ+ME+Q
Sbjct: 215 AARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQ 274
Query: 236 AKLRDALNEALREEVQRLKIAAGQA 260
L+D LNEAL+EE+Q LK+ GQ
Sbjct: 275 VHLQDELNEALKEEIQHLKVLTGQV 299
>AT1G06850.1 | chr1:2105233-2106518 FORWARD LENGTH=338
Length = 337
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Query: 129 NSPFEGESALSGGLPDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTS 188
NS G + +G + D AKKAMP E+++EL IDPKRAKRILANRQSAARSKERK +Y
Sbjct: 116 NSVDAGCAMYAGDIMD-AKKAMPPEKLSELWNIDPKRAKRILANRQSAARSKERKARYIQ 174
Query: 189 ELERKVXXXXXXXXXXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALRE 248
ELERKV RDT+GL EN ELKLRLQ+ME+QA+LR+ALNEALR+
Sbjct: 175 ELERKVQSLQTEATTLSAQLTLYQRDTNGLANENTELKLRLQAMEQQAQLRNALNEALRK 234
Query: 249 EVQRLKIAAGQAPNMNGNPFNGGL 272
EV+R+K+ G+ N + F+ G+
Sbjct: 235 EVERMKMETGEISG-NSDSFDMGM 257
>AT2G40620.1 | chr2:16954804-16956872 REVERSE LENGTH=368
Length = 367
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 85/115 (73%)
Query: 146 AKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXXX 205
AKKAM +++AEL ++DPKRAKRI+ANRQSAARSKERK +Y ELERKV
Sbjct: 132 AKKAMAPDKLAELWVVDPKRAKRIIANRQSAARSKERKARYILELERKVQTLQTEATTLS 191
Query: 206 XXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQA 260
RDT+GL++EN ELKLRLQ ME+QAKLRDALNE L++EV+RLK A G+
Sbjct: 192 AQLSLFQRDTTGLSSENTELKLRLQVMEQQAKLRDALNEQLKKEVERLKFATGEV 246
>AT4G38900.1 | chr4:18139564-18141520 REVERSE LENGTH=554
Length = 553
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 85 HMRSLSLDTAFFEGFSLQXXXXXXXXXXXXXXXXHKRSGSMDGVNSPFEGESALSGGLPD 144
H RS+S+D+ F E S + S+DG NS + G
Sbjct: 316 HYRSVSVDSCFMEKLSFGDESLKPPPSPGSMSRKVSPTNSVDG-NSGAAFSIEFNNGEFT 374
Query: 145 YA--KKAMPAERIAELALIDPKRAKR------ILANRQSAARSKERKIKYTSELERKVXX 196
A KK M +++AE+A+ DPKR KR ILANRQSAARSKERK++Y ELE KV
Sbjct: 375 AAEMKKIMANDKLAEMAMSDPKRVKRNDPLFRILANRQSAARSKERKMRYIVELEHKVQT 434
Query: 197 XXXXXXXXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIA 256
RD GLT +N ELK RLQ+ME+QA+LRDALNEAL EVQRLK+A
Sbjct: 435 LQTEATTLSAQLTLLQRDMMGLTNQNNELKFRLQAMEQQARLRDALNEALNGEVQRLKLA 494
Query: 257 AGQA 260
G++
Sbjct: 495 IGES 498
>AT2G21230.3 | chr2:9093920-9096059 REVERSE LENGTH=526
Length = 525
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 96/184 (52%), Gaps = 9/184 (4%)
Query: 85 HMRSLSLDTAFFEGFSLQXXXXXXXXXXXXXXXXHKRSGSMDGVNSPFEGESALSGGLPD 144
H RS+S+D+ F + SG +G +S + E S
Sbjct: 295 HYRSVSMDSCFMGKLNFGDESSLKLPPSSSAKVSPTNSG--EGNSSAYSVEFGNSEFTAA 352
Query: 145 YAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXX 204
KK E++AE+ + DPKR KRILANR SAARSKERK +Y +ELE KV
Sbjct: 353 EMKKIAADEKLAEIVMADPKRVKRILANRVSAARSKERKTRYMAELEHKVQTLQTEATTL 412
Query: 205 XXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRD------ALNEALREEVQRLKIAAG 258
RD+ GLT +N ELK RLQ+ME+QA+LRD L+E L EEVQRLK+ G
Sbjct: 413 SAQLTHLQRDSMGLTNQNSELKFRLQAMEQQAQLRDGMHIIKTLSEKLNEEVQRLKLVIG 472
Query: 259 QAPN 262
+ PN
Sbjct: 473 E-PN 475
>AT2G12900.1 | chr2:5293897-5295480 FORWARD LENGTH=265
Length = 264
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 137 ALSGGLPDYAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXX 196
A S L D AK E ++ DPK+ +RIL NR+ AA SK+RK+KY +LE ++
Sbjct: 96 AKSTKLQDIAKSTKLQEIVS-----DPKKVRRILKNRELAASSKQRKLKYMIDLEHRIKF 150
Query: 197 XXXXXXXXXXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIA 256
+D + L E +E+ ++++S+E+QA+LRDAL E L E++RLK+
Sbjct: 151 LENKNALIFEKIKLLEKDKTILMNEKKEITIQIESLEQQAQLRDALTEKLHVEIERLKVI 210
Query: 257 A 257
Sbjct: 211 T 211
>AT2G13150.1 | chr2:5437056-5438459 FORWARD LENGTH=263
Length = 262
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 85 HMRSLSLDTAFFEGFSLQXXXXXXXXXXXXXXXXHKRSGSMDGVNSPFEGESALSGGLPD 144
H RSLS+D+ + L S S+DG + E E S D
Sbjct: 84 HYRSLSVDSCLSDLLKLPPSPNNVSS-----------SRSVDGEQNASELEFDTSVYTDD 132
Query: 145 YAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXX 204
K + ++ E+A DPK +RIL N++SAARSK++K++Y LE K+
Sbjct: 133 ELNKIAKSTKLKEVA-SDPKEVRRILKNQESAARSKQKKLQYMINLELKINFLENKNASI 191
Query: 205 XXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLK 254
D + E +E+ +R++S+E+ A+LRDAL E L E++RLK
Sbjct: 192 FEKIKLLENDKTMRMNEKKEIMIRIESLEQHAELRDALTEHLHVEIERLK 241
>AT2G12940.1 | chr2:5317513-5319089 FORWARD LENGTH=295
Length = 294
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 144 DYAKKAMPAERIAELALIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXX 203
D K + ++ E+AL DPK +RIL NR+SAA K++K++Y LE ++
Sbjct: 131 DELNKIAKSNKLKEVAL-DPKEVRRILKNRESAAHLKQKKLQYMINLEHRINFVENENAS 189
Query: 204 XXXXXXXXXRDTSGLTAENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQAPNM 263
D + + E +E+ +R++SME QA+LRD L E L E +RLK A N
Sbjct: 190 IFEKIKLLENDKTMMMNEKKEIMIRIESMEIQAQLRDVLTEHLHGESERLKAALISNENG 249
Query: 264 NG 265
NG
Sbjct: 250 NG 251
>AT2G42380.2 | chr2:17647205-17648660 REVERSE LENGTH=322
Length = 321
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%)
Query: 160 LIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXXXXXXXXXXRDTSGLT 219
++DPKR KRILANRQSA RS+ RK++Y SELER V L
Sbjct: 184 ILDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLN 243
Query: 220 AENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQ 259
+N LK R+ ++ + +DA EAL+ E++RL+ Q
Sbjct: 244 VDNSALKQRIAALSQDKLFKDAHQEALKREIERLRQVYNQ 283
>AT3G58120.1 | chr3:21521289-21523078 REVERSE LENGTH=330
Length = 329
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%)
Query: 160 LIDPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXXXXXXXXXXRDTSGLT 219
+ DPKR KRILANRQSA RS+ RK++Y SELER V L
Sbjct: 200 IHDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLDHQRLLLN 259
Query: 220 AENRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQ 259
+N +K R+ ++ + +DA EAL+ E++RL+ Q
Sbjct: 260 VDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQ 299
>AT2G21235.1 | chr2:9096592-9098767 REVERSE LENGTH=551
Length = 550
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 162 DPKRAKRILANRQSAARSKERKIKYTSELERKVXXXXXXXXXXXXXXXXXXRDTSGLTAE 221
D K+ KR+LANR SAARSKE + K ++E +V ++ + E
Sbjct: 359 DAKKYKRMLANRASAARSKENREKKIRDMELRVETLENTQASLFGTMTLLEKENIVMMNE 418
Query: 222 NRELKLRLQSMEEQAKLRDALNEALREEVQRLKIAAGQ 259
N+ K+RLQ +E+QA L AL + L +E++RL+ A +
Sbjct: 419 NKLAKIRLQLLEQQAPLLTALTKQL-DELRRLEKEANE 455
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,320,836
Number of extensions: 90999
Number of successful extensions: 387
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 13
Length of query: 328
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,392,385
Effective search space: 1921856165
Effective search space used: 1921856165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)