BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0161700 Os12g0161700|AK106794
         (247 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43770.2  | chr1:16548509-16550257 FORWARD LENGTH=432           84   8e-17
AT3G02890.1  | chr3:640828-645303 FORWARD LENGTH=995               58   6e-09
AT5G16680.1  | chr5:5467534-5472956 REVERSE LENGTH=1312            57   1e-08

>AT1G43770.2 | chr1:16548509-16550257 FORWARD LENGTH=432
          Length = 431

 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 17  RLEVWPAS-LGTSSFTDENIALFLFPPKMRPDGKL-DQLVKEVIEYDLALRAVMGKTEML 74
           RLEVWP + L      DE++ALF FP     D K+ D LV ++ + D A+R V+   E+L
Sbjct: 340 RLEVWPKTFLKNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAELL 399

Query: 75  IFPSTMLPKQYQAFQGKHYLWGLFRPRK 102
           +F S MLPK    F  K+YLWG+F+PR+
Sbjct: 400 LFTSYMLPKDSWTFNSKYYLWGVFKPRQ 427



>AT3G02890.1 | chr3:640828-645303 FORWARD LENGTH=995
          Length = 994

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 10  VNVTKHSRLEVWPASLGTSSFTDENIALFLFPPKMRP-DGKLDQLVKEVIEYDLALRAVM 68
           V + +  RL  WPA    +   ++++ALF F   +   +     LV  +I+ DLAL+  +
Sbjct: 743 VTLNEVPRLSSWPAQFQDTGAKEQHVALFFFAKDIESYEKNYKPLVDNMIQKDLALKGNL 802

Query: 69  GKTEMLIFPSTMLPKQYQAFQGKHYLWGLFRPRKD 103
              E+LIF S  LP+  Q +    +LWG+FR +K+
Sbjct: 803 EGVELLIFASNQLPQDCQRWNMLFFLWGVFRGKKE 837



>AT5G16680.1 | chr5:5467534-5472956 REVERSE LENGTH=1312
          Length = 1311

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 17  RLEVWPASLGTSSFTDENIALFLFPPKMRP-DGKLDQLVKEVIEYDLALRAVMGKTEMLI 75
           R   WP         + +IALF F       +     LV  +I+ DLAL+  +   ++LI
Sbjct: 887 RKSTWPTQFEKLGTKEAHIALFFFAKDTESYERNYKPLVDNMIKNDLALKGNLDNVDLLI 946

Query: 76  FPSTMLPKQYQAFQGKHYLWGLFRPRKDI 104
           F S  LP   Q +   ++LWG+F+ RK+ 
Sbjct: 947 FASNQLPSNCQRWNMLYFLWGVFQGRKET 975



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,398,560
Number of extensions: 221601
Number of successful extensions: 564
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 3
Length of query: 247
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 151
Effective length of database: 8,474,633
Effective search space: 1279669583
Effective search space used: 1279669583
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)