BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0158400 Os12g0158400|Os12g0158400
(254 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36026.1 | chr2:15127265-15127816 FORWARD LENGTH=184 57 8e-09
AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160 56 2e-08
AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316 53 2e-07
AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222 52 4e-07
>AT2G36026.1 | chr2:15127265-15127816 FORWARD LENGTH=184
Length = 183
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 173 SSDPRADFRESMVQMVVEMGLCGWDDLRCMLRRLLALNAPRHHAAILTAFAEV 225
S DP DFR+SM+QM++E + +DLR +L L+LN P HH I+ AF+E+
Sbjct: 94 SDDPYLDFRQSMLQMILENEIYSKNDLRELLHCFLSLNEPYHHGIIIRAFSEI 146
>AT3G52525.1 | chr3:19475159-19475638 FORWARD LENGTH=160
Length = 159
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 173 SSDPRADFRESMVQMVVEMGLCGWDDLRCMLRRLLALNAPRHHAAILTAFAEV 225
S DP DFR+SM+QM++E + D+LR +L+ L+LN+ HH I+ AF+E+
Sbjct: 74 SDDPYLDFRQSMLQMILENQIYSKDELRELLQCFLSLNSHYHHGIIVRAFSEI 126
>AT2G18500.1 | chr2:8027102-8028049 FORWARD LENGTH=316
Length = 315
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 173 SSDPRADFRESMVQMVVEMGLCGWDDLRCMLRRLLALNAPRHHAAILTAFAEVCAQL 229
S DP DF+ SM++M+VE + +L +L L+LNA RHH AI+ AF+E+ L
Sbjct: 234 SEDPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHHRAIVRAFSEIWVAL 290
>AT5G19650.1 | chr5:6639632-6640297 REVERSE LENGTH=222
Length = 221
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 173 SSDPRADFRESMVQMVVEMGLCGWDDLRCMLRRLLALNAPRHHAAILTAFAEVCAQL 229
S DP DFR SMV+M+VE + +L+ +L+ L+LN+ +HH I+ F E+ A L
Sbjct: 162 SKDPYEDFRTSMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVFLEIYATL 218
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.136 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,565,367
Number of extensions: 54674
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 4
Length of query: 254
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 158
Effective length of database: 8,474,633
Effective search space: 1338992014
Effective search space used: 1338992014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)