BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0156500 Os12g0156500|Os12g0156500
         (327 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36090.1  | chr2:15158631-15159584 FORWARD LENGTH=318          114   9e-26
AT3G44326.1  | chr3:16000933-16002024 REVERSE LENGTH=364           99   4e-21
AT2G27310.1  | chr2:11683954-11684967 REVERSE LENGTH=338           94   8e-20

>AT2G36090.1 | chr2:15158631-15159584 FORWARD LENGTH=318
          Length = 317

 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 97/201 (48%), Gaps = 30/201 (14%)

Query: 56  FRELAADAETWRGLCLATWPSLRDVDGLDECGGVTGGGGYRALFADAFPLPAEARGLVPS 115
              LA++   W  +C +TWPS                GG R+ F+DA+ +  E  G V  
Sbjct: 48  LHHLASNEILWSKICRSTWPSC--------------SGGSRSFFSDAYSM-VETAGTVSD 92

Query: 116 SASLLPARLVSAVDLHHGEVCLMSRVVETDASSEWFLGSPFRVDALVQEGFSAPAPIT-- 173
                P  L+SAVDLH+    + SRVV+T+ ++ WF  SP R+D LV    +   PI   
Sbjct: 93  LDRPFP-ELISAVDLHYRGKLIFSRVVKTETTTAWFKSSPLRID-LVDTKDTVATPIKRR 150

Query: 174 ----------PAELTLSWILIDPATGRAVNASSRRPVSVDREWLAGETVARFTXXXXXXX 223
                       +LTLSWI+IDP   RA N SS RPVSV R W++GE  A+F        
Sbjct: 151 QRTEDTCRDLEKDLTLSWIVIDPIGKRAANISSHRPVSVQRNWISGEVEAQF-ATVVGAV 209

Query: 224 XXXXXXXTCDDRHGHVREVSL 244
                  TC +   HVREVSL
Sbjct: 210 ECVITVVTCGEEEMHVREVSL 230



>AT3G44326.1 | chr3:16000933-16002024 REVERSE LENGTH=364
          Length = 363

 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 86/173 (49%), Gaps = 20/173 (11%)

Query: 59  LAADAETWRGLCLATWPSLRDVDGLDECGGVTGGGGYRALFADAFPLPAEARGL-VPSSA 117
             +D   WR  C ATWPS  D          T   G+R  F+D+FP      G+ +P S 
Sbjct: 55  FCSDESLWRQQCSATWPSTSDTRVQSIIS--TFPDGHRTFFSDSFPFLEHDVGINLPPSV 112

Query: 118 SLLPARLVSAVDLHHGEVCLMSRVVETDASSEWFLGSPFRVDALVQEGFSAPAPITPAE- 176
               + L+SAVD+ + +  + SRV  T+  S WFL SP RVD LV+     P  +   + 
Sbjct: 113 D--TSELISAVDIFYKDDVIFSRVHVTETVSGWFLCSPMRVD-LVEPKELIPTRVLVTDQ 169

Query: 177 -------------LTLSWILIDPATGRAVNASSRRPVSVDREWLAGETVARFT 216
                        L+LSWILIDP   RA + S+R+PVSV R WL GE   +F+
Sbjct: 170 CKDDTWKSDLEENLSLSWILIDPTCKRAADVSTRKPVSVHRHWLTGEVHVKFS 222



>AT2G27310.1 | chr2:11683954-11684967 REVERSE LENGTH=338
          Length = 337

 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 82/173 (47%), Gaps = 20/173 (11%)

Query: 59  LAADAETWRGLCLATWPSLRDVDGLDECGGVTGGGGYRALFADAFPLPAEARGLVPSSAS 118
           L  + + W+ L + TWPS+ D   +        G  YR+ FAD++P          S   
Sbjct: 46  LCTEEKLWQELSIDTWPSINDPRVVQAISSFPSG--YRSFFADSYPFTEHT---WQSEKH 100

Query: 119 LLPARLVSAVDLHHGEVCLMSRVVETDA---SSEWFLGSPFRVDAL-----VQEGFSAPA 170
             P  L+SAVDL++    + S+V E +     S WFL SPFRVD L     VQ     P 
Sbjct: 101 DPPTGLISAVDLYYRGEIIYSKVQEMETEKGKSGWFLSSPFRVDILDPKESVQTRIRYPG 160

Query: 171 PITPA-------ELTLSWILIDPATGRAVNASSRRPVSVDREWLAGETVARFT 216
               A        + L+WILIDP   RA N SSR+ VS  R WL G+   RF+
Sbjct: 161 GDYEAWVKDMEESMKLNWILIDPIKKRAANISSRKAVSARRNWLTGDLEIRFS 213



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,539,560
Number of extensions: 155904
Number of successful extensions: 340
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 3
Length of query: 327
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,392,385
Effective search space: 1913463780
Effective search space used: 1913463780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)