BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0152700 Os12g0152700|AK099473
(279 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04740.1 | chr5:1368713-1371391 REVERSE LENGTH=302 320 6e-88
AT1G16880.1 | chr1:5773796-5776125 FORWARD LENGTH=291 257 4e-69
AT1G76990.1 | chr1:28933387-28935179 FORWARD LENGTH=454 60 1e-09
AT2G03730.1 | chr2:1137820-1139809 REVERSE LENGTH=457 53 2e-07
AT1G12420.1 | chr1:4226673-4228917 REVERSE LENGTH=442 49 2e-06
>AT5G04740.1 | chr5:1368713-1371391 REVERSE LENGTH=302
Length = 301
Score = 320 bits (820), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 161/244 (65%), Positives = 190/244 (77%), Gaps = 7/244 (2%)
Query: 42 LAATAAPRIFCQSINSADVLGA----SSTTSDDAIPQPVVLIDQDSDRDATIVQLSFGDR 97
L + R++ SINS D S DD +P P+V+IDQD+D +ATIVQLSFG+R
Sbjct: 59 LTKSIKNRVYA-SINSIDSAATPSYPKSEDDDDVVPMPMVMIDQDADPEATIVQLSFGNR 117
Query: 98 LGALLDTMKALKDLGLDVTKGSVSTESAVTQTKFHIMR--SGRKVEDPDTLEKIRLTVIN 155
LGAL+DTM+ALKDLGLDV KG+VSTE ++ QTKF I + +GRKVEDPD LE+IRLT+IN
Sbjct: 118 LGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSITKRDTGRKVEDPDLLEQIRLTIIN 177
Query: 156 NLLQYHPESSENLAMGEFFGIKAPEKKXXXXXXXXXXXXXXGPKRSMLYIETADRPGLLL 215
NLL+YHPE SE LAMGE FGIKAPEKK GPKRS+L IETADRPGL++
Sbjct: 178 NLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLVIETADRPGLVV 237
Query: 216 EIVKIITDVNVDVESAEIDTEGLVAKDKFHVSYRGAKLNSSLSQVLVNCLRYYLRRPETD 275
E++K++ DVN+DVESAEIDTEGLVAKDKFHVSY+G LN SLSQVLVNCLRY+LRRPETD
Sbjct: 238 EMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLSQVLVNCLRYFLRRPETD 297
Query: 276 EDSY 279
DSY
Sbjct: 298 IDSY 301
>AT1G16880.1 | chr1:5773796-5776125 FORWARD LENGTH=291
Length = 290
Score = 257 bits (657), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 129/217 (59%), Positives = 157/217 (72%), Gaps = 2/217 (0%)
Query: 65 STTSDDAIPQPVVLIDQDSDRDATIVQLSFGDRLGALLDTMKALKDLGLDVTKGSVSTES 124
S D +P PVV+IDQDSD DAT+++++FGDRLGALLDTM ALK+LGL+V K +V +S
Sbjct: 74 SAADSDKVPTPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDS 133
Query: 125 AVTQTKFHIMR--SGRKVEDPDTLEKIRLTVINNLLQYHPESSENLAMGEFFGIKAPEKK 182
+ KF I R SGRKVEDP+ LE IRLTVINNLL++HPESS LAMG FG+ P +
Sbjct: 134 SGKHNKFAITRADSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEP 193
Query: 183 XXXXXXXXXXXXXXGPKRSMLYIETADRPGLLLEIVKIITDVNVDVESAEIDTEGLVAKD 242
GP RS+L+IE+ADRPGLL+E+VKII+D++V VES E DTEGL+AK
Sbjct: 194 IDVDIATHITIEDDGPDRSLLFIESADRPGLLVELVKIISDISVAVESGEFDTEGLLAKV 253
Query: 243 KFHVSYRGAKLNSSLSQVLVNCLRYYLRRPETDEDSY 279
KFHVSYR L L QVL N LRY+LRRP TDE S+
Sbjct: 254 KFHVSYRNKALIKPLQQVLANSLRYFLRRPSTDESSF 290
>AT1G76990.1 | chr1:28933387-28935179 FORWARD LENGTH=454
Length = 453
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 22/166 (13%)
Query: 72 IPQPVVLIDQDSDRDATIVQLSFGDRLGALLDTMKALKDLGLDVTKGSVSTESAVTQTKF 131
I P V ID S ++ T+V++ ++ G LL+ ++ L DL L +TK +S++ F
Sbjct: 20 INPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSDGGWFMDVF 79
Query: 132 HIM-RSGRKVEDPDTLEKIRLTVINNLLQYHPESSENLAMGEFFGIKAPEKKXXXXXXXX 190
H+ + G KV D T++ I + + H +S+N G+ G+ +
Sbjct: 80 HVTDQQGNKVTDSKTIDYIEKVLGP---KGHASASQNTWPGKRVGVHS------------ 124
Query: 191 XXXXXXGPKRSMLYIETADRPGLLLEIVKIITDVNVDVESAEIDTE 236
G S+ I DRPGLL E+ ++ D+N++V +AE T
Sbjct: 125 -----LGDHTSIEII-ARDRPGLLSEVSAVLADLNINVVAAEAWTH 164
>AT2G03730.1 | chr2:1137820-1139809 REVERSE LENGTH=457
Length = 456
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 35/188 (18%)
Query: 59 DVLGASSTTSDDAIPQ-------PVVLIDQDSDRDATIVQLSFGDRLGALLDTMKALKDL 111
DV + S DD I + P V+ID + +D T++++ ++ G LL+ ++ L +L
Sbjct: 2 DVCLSYSYNMDDEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTEL 61
Query: 112 GLDVTKGSVSTESAVTQTKFHIM-RSGRKVEDPDTLEKIRLTVINNLLQYHPESSENLA- 169
L + K +S++ F++ + G KV D LE IR ++ P+ S +
Sbjct: 62 NLTIKKAYISSDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSL-------GPDESSCFSP 114
Query: 170 -MGEFFGIKAPEKKXXXXXXXXXXXXXXGPKRSMLYIETADRPGLLLEIVKIITDVNVDV 228
M G+K +++ + DRPGLL E+ ++ D+ +V
Sbjct: 115 SMRSTIGVKQ------------------SVDYTVVELTGTDRPGLLSELCAVLMDLQCNV 156
Query: 229 ESAEIDTE 236
+AEI T
Sbjct: 157 VNAEIWTH 164
>AT1G12420.1 | chr1:4226673-4228917 REVERSE LENGTH=442
Length = 441
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 35/168 (20%)
Query: 75 PVVLIDQDSDRDATIVQLSFGDRLGALLDTMKALKDLGLDVTKGSVSTESAVTQTKFHIM 134
P V+ID ATIV++ R G LL+ ++ L DL L + K +S++ FH+
Sbjct: 20 PRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISSDGTWNMDVFHVT 79
Query: 135 R-SGRKVEDPDTLEKIRLTVINNLLQYHPESSENLAMGEFFGIKAPEKKXXXXXXXXXXX 193
+G K+ D ++L+Y +S E + GE +
Sbjct: 80 DLNGNKLNDQ------------SVLRYIEQSIETVYYGENIEVNGL-------------- 113
Query: 194 XXXGPKRSMLYIETADRPGLLLEIVKIITDVNVDVESAEIDTE-GLVA 240
+ L + DR GLL E+ +++D+N DV A++ T G VA
Sbjct: 114 -------TALELTGTDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVA 154
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.134 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,905,850
Number of extensions: 179457
Number of successful extensions: 574
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 5
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)