BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0151500 Os12g0151500|AK058389
         (396 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08280.1  | chr1:2608408-2609604 FORWARD LENGTH=399            246   2e-65

>AT1G08280.1 | chr1:2608408-2609604 FORWARD LENGTH=399
          Length = 398

 Score =  246 bits (627), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/251 (47%), Positives = 155/251 (61%), Gaps = 12/251 (4%)

Query: 146 NVAGVMRDLAGVLGRRYRTCAXXXXXXXXXXXXXXPQIDAHDLVIRLNNARVAGFAADVG 205
           N   V   +  +   RY +CA                ID H++VIRLNNA+   F   VG
Sbjct: 158 NPIDVHNGVVSISSERYLSCAVVGNSGTLLNSQYGDLIDKHEIVIRLNNAKTERFEKKVG 217

Query: 206 VKTSLSFVNSNILHICAARNAITRAACGCHPYGGEVPMAMYVCQPAHLLDALICNATATP 265
            KT++SF+NSNILH C  R +     C CHPYG  VP+ MY+CQP H+LD  +C     P
Sbjct: 218 SKTNISFINSNILHQCGRRES-----CYCHPYGETVPIVMYICQPIHVLDYTLCK----P 268

Query: 266 SSPFPLLVTDARLDALCARIAKYYSLRRFVSATGEPA-ANWTRRHDERYFHYSSGMQAVV 324
           S   PLL+TD R D +CARI KYYS+++F+         +W++ H+   FHYSSGMQAV+
Sbjct: 269 SHRAPLLITDPRFDVMCARIVKYYSVKKFLEEKKAKGFVDWSKDHEGSLFHYSSGMQAVM 328

Query: 325 MALGVCDEVSLFGFGKSPGAKHHYHTNQKKELDLHDYEAEYDFYGDLQARPAAVPFLDDA 384
           +A+G+C++VS+FGFGK    KHHYHTNQK EL LHDYEAEY  Y DL+  P A+PFL   
Sbjct: 329 LAVGICEKVSVFGFGKLNSTKHHYHTNQKAELKLHDYEAEYRLYRDLENSPRAIPFLPKE 388

Query: 385 HGFTVPPVRLH 395
             F +P V+++
Sbjct: 389 --FKIPLVQVY 397



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,457,071
Number of extensions: 283248
Number of successful extensions: 712
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,337,553
Effective search space: 2459578135
Effective search space used: 2459578135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)